Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20380 206 / 3e-68 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT1G32540 167 / 4e-53 LOL1 lsd one like 1 (.1.2.3) AT4G21610 89 / 8e-23 LOL2 lsd one like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038409 [exp] 276 / 1e-93 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10008066 [exp] 249 / 7e-85 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10000782 [exp] 177 / 1e-57 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10040081 [exp] 171 / 1e-53 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10035361 [exp] 166 / 4e-53 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10030969 [exp] 166 / 6e-53 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10020766 [exp] 86 / 2e-21 AT4G21610 133 / 3e-40 lsd one like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154800 [exp] 231 / 1e-78 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.001G442400 [exp] 227 / 7e-77 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.003G090300 [exp] 168 / 8e-54 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 164 / 2e-52 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.004G043100 [exp] 77 / 5e-18 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10023392 pacid=23180938 polypeptide=Lus10023392 locus=Lus10023392.g ID=Lus10023392.BGIv1.0 annot-version=v1.0 ATGCAGAGTCAGTTAGTGTGTAGCGGATGTAGGAGCGTTCTTCTTTATCCAAGAGGAGCTTCCAACGTTTGCTGCGCGTTATGTAATACACTCACAGCTG TACCTGCTCCTGGATTGGAATTGGCCCAAATTATATGTGGAGGTTGCAGGACATTGCTAATGTATACACGTGGAGCAACAAGTGTCAGATGCTCTTGTTG TCACACTGTCAACCTTGCACCAGTATCTAGTCAGATTGCTCACATAAACTGTGGAAATTGCCGGACAATGCTTGTGTATCCCGAGGGAGCTCCATCTGTG AAGTGTGCAGTCTGTCACTATGTTACTGATGCCGGTATGGGGAATGGGAGGGTTCAACCGCCAGTGAATAGACCAAACAGTGCAGGTTCTGCGGTATCAT ATACTGCCTCATCATACCCTCCGCAATCACCATCATCACAGACGTCACAGACTCAAACGGTAGTTGTCGAAAACCCAATGTCTGTCAATGAAAGTGGGAA ATTGGTAAGCAATGTGGTGGTTGGAGTCACCACAGATAAGAAGTAA
AA sequence Show only first row Show all	>Lus10023392 pacid=23180938 polypeptide=Lus10023392 locus=Lus10023392.g ID=Lus10023392.BGIv1.0 annot-version=v1.0 MQSQLVCSGCRSVLLYPRGASNVCCALCNTLTAVPAPGLELAQIICGGCRTLLMYTRGATSVRCSCCHTVNLAPVSSQIAHINCGNCRTMLVYPEGAPSV KCAVCHYVTDAGMGNGRVQPPVNRPNSAGSAVSYTASSYPPQSPSSQTSQTQTVVVENPMSVNESGKLVSNVVVGVTTDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	0	1
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	2.0	0.9062
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	4.2	0.8870
AT2G42790		CSY3	citrate synthase 3 (.1)		Lus10010945 [exp]	4.6	0.8955
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	4.6	0.8869
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	5.7	0.8721
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	6.8	0.8534
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	7.4	0.8890
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	8.6	0.8964
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	14.4	0.8276
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	23.0	0.8608

Compare expression of checked genes

Lus10023392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.