Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19490 442 / 6e-147 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038410 [exp] 514 / 1e-173 AT4G19490 1263 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023394 [exp] 427 / 1e-141 AT4G19490 1179 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154000 [exp] 427 / 3e-141 AT4G19490 1174 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Potri.001G442900 [exp] 411 / 5e-135 AT4G19490 1144 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF10475 [flax] [poplar] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Lus10023393 pacid=23180912 polypeptide=Lus10023393 locus=Lus10023393.g ID=Lus10023393.BGIv1.0 annot-version=v1.0 ATGGATTCGCAGCCTTCCCTTACGGGAAGGTCATTGGTTGACTCCACGGCCACAACTTCGTCTTCCTCCGCCGTCCCATCGTCTCTCGCCGTTAGCAGGG CGAATTCCTCACTGGCTAAATCACTGTCCGATGCTAGCAGCCAGAGCCTTTCTTCGATCCTCAACAATCCCCACGTTGGCAAATCCGGTGTTTACGGCTC CGATGCGACATGGGTGGGGTGGTGGTCCTCCTCGACTGCCGTGGCTCCGCCGGAATTTGCTCCGTTGATCTCCACCAAGGCGGTGTCTGACGTGTCGAGA TCCGATTTCCAGAGTTACCTGTCTTCTATTTCTGAGTTCTATAACCGATTTGAGGACATCAGGAATCACACGACCAAGGAAGAGACTCTTAAGTTGGAGA GCATCGGTGGGCAGGGAGAGGCGCTTGTTGCTTGTTTAAGGGAGGTTCCTGCGTTGTACTTTAAAGAGGATTTCGCTTTGGAGGATGGGGGAACTTTCCG GGCTGCCTGCCCTTTCTCCAACGTTTCTGAGAATTTGATGTTGCAGGAGAAGCTGTCGCATTACTTGGACGTGGTGGAACTTCACTTGGTGAAGGAGATA TCTTTGCGTTCTAACTCCTTCTTCGAGGCGCAGGGAGAGTTACAGGATCTTAATGTCAGGATAGTAGAAGGGTGTAGTCGGATTCGGGAGTTGAAGGAGA CCATAAAACTTCTGGACAAGGATTTGGTTGAGTCAGCTAGGGAACTTCAGGATTTGAATGGCACTAGGGGAAATTTGTTGGCTTTGCAGCAAAAGCTGAG ACTCATATTATATGTTAACCAGGCTCTTTCCGCACTTAAATTGCTTGTTGCCTCGGGAGATTGTGCTGGCGCTTTGGATGTCACTGAAGATTTGCAGCAT TTGCTGGATGGAGATGAACTAACTGGTCTACATTGTTTTCGACACCTTCGCGATCATGTGACTACTTCAGTAGATTCTGTGAACAGTATCCTTTCTACCG AATTCTTGCGTGCTTCAATACATGACACTGGGGAGACAGATGTGATTATTTTGTCTAAAGCAAAATCTAGGGCTGCAAATCTGACAAATGGTAGAGTTGA AGAGGAAACTGATCATGCTGACAGGTCAAGTTGGATGATGAATACACTTCTAATTTTCGAGAGCGTCTTCTACCCATTGTTGTTTGTCTGCTGA
AA sequence Show only first row Show all	>Lus10023393 pacid=23180912 polypeptide=Lus10023393 locus=Lus10023393.g ID=Lus10023393.BGIv1.0 annot-version=v1.0 MDSQPSLTGRSLVDSTATTSSSSAVPSSLAVSRANSSLAKSLSDASSQSLSSILNNPHVGKSGVYGSDATWVGWWSSSTAVAPPEFAPLISTKAVSDVSR SDFQSYLSSISEFYNRFEDIRNHTTKEETLKLESIGGQGEALVACLREVPALYFKEDFALEDGGTFRAACPFSNVSENLMLQEKLSHYLDVVELHLVKEI SLRSNSFFEAQGELQDLNVRIVEGCSRIRELKETIKLLDKDLVESARELQDLNGTRGNLLALQQKLRLILYVNQALSALKLLVASGDCAGALDVTEDLQH LLDGDELTGLHCFRHLRDHVTTSVDSVNSILSTEFLRASIHDTGETDVIILSKAKSRAANLTNGRVEEETDHADRSSWMMNTLLIFESVFYPLLFVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	0	1
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	1.0	0.9803
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	1.4	0.9775
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	2.4	0.9718
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	4.5	0.9628
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	5.5	0.9583
AT1G35220			unknown protein		Lus10036487 [exp]	5.9	0.9608
AT4G39420			unknown protein		Lus10005786 [exp]	6.9	0.9547
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	7.7	0.9519
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	8.5	0.9535
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	8.8	0.9550

Compare expression of checked genes

Lus10023393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.