Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19490 1108 / 0 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038410 [exp] 1533 / 0 AT4G19490 1263 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023393 [exp] 429 / 2e-142 AT4G19490 490 / 3e-165 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10038409 [exp] 159 / 1e-42 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154000 [exp] 1244 / 0 AT4G19490 1174 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Potri.001G442900 [exp] 1209 / 0 AT4G19490 1144 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07928 [flax] [poplar] Vps54 Vps54-like protein CL0295 [flax] [poplar] Vps51 PF10475 [flax] [poplar] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Lus10023394 pacid=23181048 polypeptide=Lus10023394 locus=Lus10023394.g ID=Lus10023394.BGIv1.0 annot-version=v1.0 ATGCTAGCAGCCAGAGCCTTTCTTCGATCCTCAACAATCCCCACGTTGGCAAATCCGGTGTTTACGGCTCCGATGCGACATGGGTGGGGTGGTGGTCCTC CTCGACTGCCCTGGCTCCCCCCGGATTGTTTAAGGGAGGTTCCTGCGTTGTACTTTAAAGAGGATTTCGCTTTGGAGGATGGGGGAACTTTCCGGGCTGC CTGCCCTTTCTCCAACGTTTCTGAGAATTTGATGTTGCAGGAGAAGCTGTCGCATTACTTGGACGTGGTGGAACTTCACTTGGTGAAGGAGATATCTTTG CGTTCTAACTCCTTCTTCGAGGCGCAGGGAGAGTTACAGGATCTTAATGTCAGGATAGTAGAAGGGTGTAGTCGGATTCGGGAGTTGAAGGAGACCATAA AACTTCTGGACAAGGATTTGGTTGAGTCAGCTAGGGAACTTCAGGATTTGAATGGCACTAGGGGAAATTTGTTGGCTTTGCAGCAAAAGCTGAGACTCAT ATTATATGTTAACCAGGCTCTTTCCGCACTTAAATTGCTTGTTGCCTCGGGAGATTGTGCTGGCGCTTTGGATGTCACTGAAGATTTGCAGCATTTGCTG GATGGAGATGAACTAACTGGTCTACATTGTTTTCGACACCTTCGCGATCATGTGACTACTTCAGTAGATTCTGTGAACAGTATCCTTTCTACCGAATTCT TGCGTGCTTCAATACATGACACTGGGGAGACAGATGTGATTATTTTGTCTAAAGCAAAATCTAGGGCTGCAAATCTGACAAATGGTAGAGTTGAAGAGGT CAAGTTGGATGATGAATACACTTCTAATTTTCGAGAGCGTCTTCTACCCATTGTTGTTTGTCTGCTGAGGACTGCTAAGCTTCCATCAATTTTGAGGATA TACCGTGACACCTTGACTGCGGACATGAAAAGTGCCATTAAGAATGCAGTTGCTGAGCTTCTTCCAATTCTTGTGGCTAGACCACTGGAATCTGATTTCA CACCTGGAGAGCAAACCGTAGATGCCGATGGTGGAGGTTTATCCCTTGCAAGCAAGTTAAGGAGCTTGTCAGCTGAAGGCTTTGTGCAGCTTTTGGGTGC TATTTTCAGGATGATACAGGTTCATTTGATGCGGGCTGCAGAAGTGAAAAGAGCAATAGAATGGATTATGAGCAACATAGATGGACATTATGCTGCAGAT TCAGTTGCTGCTGCAATTGCAGCTGGTTCTGCTGCTGCCGAAGCAGCTCAAGGGGGTGATGCTCATGTTGGTTCTTTAGTTCCATTTTTGACCCCGAGAA CTTCTACTAAGTCACAATCATCACAAGGGAAAACTAATGATGCGGGAACTACATCAAGTATTTCCAAGAATTTCAGAGCTGATGTACTACGGGAGAATGC TGAGTCTGTATTTGCTGCATGTGATGCTGCTCATGGAAGATGGGCAAAACTCCTTGGAGTGCGAGCTCTTCTTCATCCTAAGTTGAGATTACAGGAGTTC CTAAGTATATACAATATCACACAAGAGTTTATATCTTCCACGGAGAAGGTTGGTGGAAGATTAGGATATAGTATACGTGGAACATTGCAGTCTCAGGCCA AAGCATTTGTTGATTTGCAGCATGAGATACGGATGACCAAAATGAAGGCTGTACTTGATCAAGAGACATGGGTGGAAGTAGATGTTCCTGATGAATTCCA GGGCATAATAACCTCATTGTTTTCTTCTGAAACTCTGATGTCGGCGGAGCTAGATGTCGTACAATCTGATAAGACAGCTACCTACTCTGAAGGGGTAACA AGTGATGATGGTTCGGTTGCCCCTGTCAGTGAAGCACATGCTCAACAGCAGTTTCCGAGGAAGGATTCCTCTGACAAGCTCAATAGTGCTCAAGAACAAT CACATCCATTGTCTGAATCAACTGGAAGTAATAAAACCGATATAGTAACATCATCAGCTCAGGGTAACAATAAGACAACAAAGGATCGTGGAAAATCTGC CTCTCAGAAACTTTTCTATGGAGGCATCGGCTACCACATGGTTAATTGTGGCTTAATATTGGTGAAGATGTTGTCGGAGTATATTGATATGAACAACTAT CTGCCGATGTTATCTTCAGAAGTTGTACATCGTGTCGTGGAGATTTTGAAATTCTTCAATACAAGGACTTGTCAACTTGTCCTTGGAGCTGGTGCCATGC AGGTGTCTGGATTGAAGTCCATCACTTCTAAACACTTGGCCCTTGCAAGTCAAGTCATCAGTTTTACATACGCTACTATTCCTGAAATCAGGCAAGTCCT CTTCCTTAAGGTACCTGAGACGCGGAAGGCCTTGCTGATGTCAGAGATAGATCGGGTTGCACAGGATTATAAGGTTCACCGGGATGAAATATATACAAAG CTGGTTCAAATAATGAGAGAAAGGTTGTTTGTACATCTTCGGGGGTTGCCTCAAATTGTTGATAGCTGGAACAGACCAGAAGAATCGGACCCACAGCCTA GTCAGTTTGCTCGATCTCTTACCAAGGAGGTTGGCTATCTACAACGTGTTCTGTCAAGAACTTTGCATGAGTCTGATGTTAAAGCGATTTTTCGGCAAGT TGTTGTAATCTTCCACTCCCAAATTTCTGAGGCATTTTCACGGCTAGATATTAGCACTCCACAAGCCAAGGACAGGCTGCATCGGGATGTCAAACACATC CTTGGATGCATTAGATCGTTGCCTTCCGATAACTTAGGCGAATCCAGTACTCCTAACTGGGGGCAACTTGATGAGTTCTTGGTACAGAAGTTTGGAGCAG AAGCTGAATGA
AA sequence Show only first row Show all	>Lus10023394 pacid=23181048 polypeptide=Lus10023394 locus=Lus10023394.g ID=Lus10023394.BGIv1.0 annot-version=v1.0 MLAARAFLRSSTIPTLANPVFTAPMRHGWGGGPPRLPWLPPDCLREVPALYFKEDFALEDGGTFRAACPFSNVSENLMLQEKLSHYLDVVELHLVKEISL RSNSFFEAQGELQDLNVRIVEGCSRIRELKETIKLLDKDLVESARELQDLNGTRGNLLALQQKLRLILYVNQALSALKLLVASGDCAGALDVTEDLQHLL DGDELTGLHCFRHLRDHVTTSVDSVNSILSTEFLRASIHDTGETDVIILSKAKSRAANLTNGRVEEVKLDDEYTSNFRERLLPIVVCLLRTAKLPSILRI YRDTLTADMKSAIKNAVAELLPILVARPLESDFTPGEQTVDADGGGLSLASKLRSLSAEGFVQLLGAIFRMIQVHLMRAAEVKRAIEWIMSNIDGHYAAD SVAAAIAAGSAAAEAAQGGDAHVGSLVPFLTPRTSTKSQSSQGKTNDAGTTSSISKNFRADVLRENAESVFAACDAAHGRWAKLLGVRALLHPKLRLQEF LSIYNITQEFISSTEKVGGRLGYSIRGTLQSQAKAFVDLQHEIRMTKMKAVLDQETWVEVDVPDEFQGIITSLFSSETLMSAELDVVQSDKTATYSEGVT SDDGSVAPVSEAHAQQQFPRKDSSDKLNSAQEQSHPLSESTGSNKTDIVTSSAQGNNKTTKDRGKSASQKLFYGGIGYHMVNCGLILVKMLSEYIDMNNY LPMLSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFTYATIPEIRQVLFLKVPETRKALLMSEIDRVAQDYKVHRDEIYTK LVQIMRERLFVHLRGLPQIVDSWNRPEESDPQPSQFARSLTKEVGYLQRVLSRTLHESDVKAIFRQVVVIFHSQISEAFSRLDISTPQAKDRLHRDVKHI LGCIRSLPSDNLGESSTPNWGQLDEFLVQKFGAEAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	0	1
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	2.4	0.9454
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	3.9	0.9383
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	4.0	0.9442
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	4.8	0.9006
AT1G50120			unknown protein		Lus10040977 [exp]	4.9	0.9279
AT2G27900			unknown protein		Lus10000865 [exp]	5.3	0.8988
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	6.3	0.8804
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	8.1	0.9379
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	8.2	0.9381
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	8.9	0.9086

Compare expression of checked genes

Lus10023394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.