Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 52 / 5e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 48 / 1e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 47 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 43 / 8e-05 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033258 [exp] 138 / 3e-42 AT1G17930 56 / 3e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008144 [exp] 129 / 4e-38 AT1G17930 54 / 4e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10002099 [exp] 124 / 4e-36 ND 39 / 7e-04 Lus10007213 [exp] 79 / 1e-18 AT1G17020 119 / 9e-33 senescence-related gene 1 (.1) Lus10009805 [exp] 81 / 2e-18 AT2G25010 54 / 6e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008465 [exp] 77 / 5e-18 AT2G04865 49 / 2e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10032799 [exp] 71 / 8e-16 AT2G04865 64 / 6e-13 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004447 [exp] 66 / 3e-14 AT1G17930 47 / 3e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 52 / 9e-08 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10023395 pacid=23180908 polypeptide=Lus10023395 locus=Lus10023395.g ID=Lus10023395.BGIv1.0 annot-version=v1.0 ATGCTTAATGTTTCAGATGTTGAGATCAAGGGGAGCTGCTATGCAGCAAGCGGGTTTCACCTAGACCACTTACTCGGAGTTGCCCAGACAGGTGAGCTTG ACGATGCGAGCACAACCGTCTGCTACTTGATTGCGTTGTTGGGCTCCACTATTTTTACGGACCGCAGTCAGACTAGTGTGCATATTGGGGTTCTTGAGGG ATTGCGAGATGTGCGGATGACTCGGGAATATTATTGGGGTGCGGCCACACTTGCTTATCTGTACAGAAAGCTCGGGGTTGCCTCTCGCGCGGATCTACGT CGCTGTCGGGCTGCCATTGAATGGCGACGAAAATGTCTTGATGAACACCGAGACCCCAGCGTCGGACAGGATTCTCATATCAAAATCATCCACATCCTAC CTAAAAAATCTGAAACACCTGGAATAACAACAACCATACTCCTCACGTTAGGCATATTTCATCGACAGGAAGGCCAGGTTGACAGAAGTGCAATACTTTC GGATTTGGAATTCGTTATAACCCTATACTTTCAGGCTAGGTGTGGCAACAAGAATCAATATTCAACTAAGTTGAGTTAA
AA sequence Show only first row Show all	>Lus10023395 pacid=23180908 polypeptide=Lus10023395 locus=Lus10023395.g ID=Lus10023395.BGIv1.0 annot-version=v1.0 MLNVSDVEIKGSCYAASGFHLDHLLGVAQTGELDDASTTVCYLIALLGSTIFTDRSQTSVHIGVLEGLRDVRMTREYYWGAATLAYLYRKLGVASRADLR RCRAAIEWRRKCLDEHRDPSVGQDSHIKIIHILPKKSETPGITTTILLTLGIFHRQEGQVDRSAILSDLEFVITLYFQARCGNKNQYSTKLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10026685 [exp]	2.4	0.7189
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	5.2	0.6108
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	9.4	0.6284
					Lus10028608 [exp]	15.9	0.5899
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	19.3	0.5848
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10035834 [exp]	20.1	0.5269
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	22.2	0.6102
AT3G47040			Glycosyl hydrolase family prot...		Lus10000391 [exp]	24.1	0.5953
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	25.1	0.5934
					Lus10006584 [exp]	27.5	0.5838

Compare expression of checked genes

Lus10023395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.