Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44560 230 / 7e-76 VPS2.2 SNF7 family protein (.1.2) AT1G03950 196 / 2e-62 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT2G06530 86 / 6e-20 VPS2.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038407 [exp] 254 / 7e-85 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10033914 [exp] 176 / 9e-55 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10017166 [exp] 91 / 1e-21 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10037660 [exp] 88 / 2e-20 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10003538 [exp] 83 / 3e-20 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1) Lus10015642 [exp] 85 / 3e-19 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10021561 [exp] 59 / 7e-11 AT2G06530 194 / 1e-63 SNF7 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154700 [exp] 240 / 6e-80 AT5G44560 331 / 1e-116 SNF7 family protein (.1.2) Potri.001G442500 [exp] 234 / 1e-77 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 201 / 9e-65 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 195 / 3e-62 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.001G170400 [exp] 90 / 2e-21 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.018G065100 [exp] 89 / 4e-21 AT2G06530 332 / 9e-117 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [flax] [poplar] PspA PF03357 [flax] [poplar] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Lus10023396 pacid=23180980 polypeptide=Lus10023396 locus=Lus10023396.g ID=Lus10023396.BGIv1.0 annot-version=v1.0 ATGAACTTCTTCAAGAAGAAAACCTCTCCCAAAGGTACTCTCGCTTCCTCTGCAACTTCGTTCTTCTTTTCCCTCTACAAATTTATTCATGGCTTCCCCA CTGTCGTTTCAACAGAAGCTCTAAGGAGCAGTAAGAGAGATATGGCGGTCGCCACCAGAGGTATTGAACGGGAAATAGCGTCTCTTCAAATGGAGGCTGC TACCAAAATCCTTGCTCGTCAATTGGTGCGGCTCAGGCAGCAGATAACGAATTTGCAAGGGAGTCGTGCTCAGATCAGAGGAGTTGCTACTCATACACAG GCTCTATATGCCAACACTTCGATTTCTACTGGGATGAAAGGTGCAACTAAGGCCATGGTCGCTATGAACAAGCAAATGGCTCCTGAAAAACAAGCTAAAG TGATCAGAGAATTCCAGAAGCAGTCATCACAATTGGATATGACGATCGAAATGATGTCGGAATCTATTGACGAAACCTTGGACAAAGATGAGGCGGAAGA GGAAACAGAGGAGCTTACTAACCAGGTCCTTGATGAGATTGGTGTGGATATTGCATCTCAGTTTCGGAGATGTGTAATCCAGTTTTGTTTCATACTCAAC AGTTATCTTCAGCTCCCAAAGGCCGCATTGCATCAAAGAATGCAACTAATGCCGTTACCAGGTACATTCGGTTCCCGCTGCATATTGATCGTCTCTTTAG ATCTCTTTCTTTCCTTGCATAATTGTTGTGTGTCAATGTCCTTTGCAGCACCGAGTCTGCCGATGTCGAGGAACTTGAGAAAAGGTTGGCCTCTCTGCGG CGAATCTGAAGCCGGGCCACGATGA
AA sequence Show only first row Show all	>Lus10023396 pacid=23180980 polypeptide=Lus10023396 locus=Lus10023396.g ID=Lus10023396.BGIv1.0 annot-version=v1.0 MNFFKKKTSPKGTLASSATSFFFSLYKFIHGFPTVVSTEALRSSKRDMAVATRGIEREIASLQMEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQ ALYANTSISTGMKGATKAMVAMNKQMAPEKQAKVIREFQKQSSQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQFRRCVIQFCFILN SYLQLPKAALHQRMQLMPLPGTFGSRCILIVSLDLFLSLHNCCVSMSFAAPSLPMSRNLRKGWPLCGESEAGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10023396 [exp]	0	1
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10002846 [exp]	2.0	0.8531
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10019725 [exp]	11.1	0.7454
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	12.0	0.8603
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	17.0	0.7925
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	17.2	0.8070
AT4G35150			O-methyltransferase family pro...		Lus10025440 [exp]	20.5	0.7885
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	24.0	0.8444
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041334 [exp]	25.6	0.7597
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	26.2	0.8157
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10038185 [exp]	26.6	0.8039

Compare expression of checked genes

Lus10023396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.