Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038406 [exp] 113 / 2e-33 AT5G50360 59 / 3e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091900 [exp] 40 / 9e-05 AT5G50360 221 / 8e-71 unknown protein Potri.012G094400 [exp] 40 / 0.0002 AT5G50360 233 / 3e-75 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023397 pacid=23181011 polypeptide=Lus10023397 locus=Lus10023397.g ID=Lus10023397.BGIv1.0 annot-version=v1.0 ATGATGGATGATGGTAGAGGAGGCGGCGCGTGTTGTGTAGCCAAGTACGGCGGAGGAGGATACGGCGAGTACGTGGACGTGTCTAAGATGCATCGTATTA TGCTTCGGTTCAGGCCCATAGCACCCAAGCCCACCGCAGCCGGATCATCTTCCTCAAGTGGGTCGGATCCTGACGTCACCTCCAAACCTGCTATTGCTGC TGCTCCTCGCCGCGGGAGGAAGCGGCCGAGAAAGGCGGCGAAGGGAACGACGTCGTCGCTAGTGAAATCGGAAGAAAGGATAGTATTGACGACTCTTCCG CTTTTTCCGGAGTCTCCTGACGGATGCGGTTGTAGTCACGATAACGGTGGCGGCGCCGCAGTGTGA
AA sequence Show only first row Show all	>Lus10023397 pacid=23181011 polypeptide=Lus10023397 locus=Lus10023397.g ID=Lus10023397.BGIv1.0 annot-version=v1.0 MMDDGRGGGACCVAKYGGGGYGEYVDVSKMHRIMLRFRPIAPKPTAAGSSSSSGSDPDVTSKPAIAAAPRRGRKRPRKAAKGTTSSLVKSEERIVLTTLP LFPESPDGCGCSHDNGGGAAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50360			unknown protein		Lus10023397 [exp]	0	1
					Lus10021271 [exp]	2.4	0.8553
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	13.7	0.8441
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	15.8	0.8356
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10002269 [exp]	24.2	0.8204
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	29.4	0.7591
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10014316 [exp]	32.2	0.8003
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Lus10018657 [exp]	33.0	0.8052
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10005451 [exp]	34.6	0.7760
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	42.0	0.7603
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	43.0	0.7642

Compare expression of checked genes

Lus10023397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.