Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35630 323 / 3e-100 GEM1, MOR1 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038405 [exp] 598 / 0 AT2G35630 2987 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G443200 [exp] 507 / 2e-165 AT2G35630 2869 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1) Potri.011G153700 [exp] 480 / 1e-155 AT2G35630 2928 / 0.0 MICROTUBULE ORGANIZATION 1, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023398 pacid=23181004 polypeptide=Lus10023398 locus=Lus10023398.g ID=Lus10023398.BGIv1.0 annot-version=v1.0 ATGGTGAAAACTGTTCTACATGAACTTGTCAAGCTCCGTGGCGCTGCAATTAAGGGTCACCTCTCTATGGTTCCTATAGACATGAAACCACAACCAATCA TCCTTGCGTACATTGACCTCAACTTGGAGACTTTAGCTGCTGCAAGAATGTTAACCTCATCAGGACCAGCTGGTCAAACCCACTGGGGTGATTCTGCTGC CAATAATCCTTCATCTGCCACACACTCTGCTGATGCCCAGTTAAAGCAAGAACTTGCAGCCATATTCAAGAAAATCGGCGATAAACAAACCTGCACCATT GGTCTTTATGAGCTGTATCGTATCACACAGCTGTATCCCAAGGTTGATATATTTTCTCAGCTTCAAAATGCCAGTGAGGCATTCCGGACTTATATTAGAG ATGGTTTAGCTCAGGTTCGGGTTCACCATCAAATGGAGAAAAATGCTGCTGCTGGAAGAACTCCTTCTAGTATGCCAATGGCGACGCCACCTCCATCGGC TCTCAATGCTTCTTCTCCCGACTTTGTGCCCCTCTCCCCTGGTCAAACCAATTCTTTGAGCGATGCAAAGTCATTACATGTGAAATCCGAACCGACAAAC TTCCACTTACCTCCAGCATATGGTGAGGATAGTCGAGGTGTCAATATTCTCGCTTCGAGAGGTCTCATCTCAGAGAATTCACTGGGCGACCAAAGAAACG AGAAATTCATGAGTGGGGTAACAAGTGGGACGCTGGATGCGATAAGAGAGAGGATGAAGAGTATGCAACTAGCTGCCACTGGTGGGAATCCAGATTCCGG TAATACCACCAGGCCATTAATGTCGATGAACGATAACATAAACAATACCCTCACTTTCCAGGTCCCTCGCTCTGCAGAACCGGTCAATGCTGAGAATCCT GCACAAGCTGGGATCCACCCCATGGATGAAAAGGCGCTTTCTGGCCTCCAAGCTCGAATGGAAAGATTGAGAAGTGGTTCTATGGACACTCTGTAG
AA sequence Show only first row Show all	>Lus10023398 pacid=23181004 polypeptide=Lus10023398 locus=Lus10023398.g ID=Lus10023398.BGIv1.0 annot-version=v1.0 MVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSSGPAGQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQTCTI GLYELYRITQLYPKVDIFSQLQNASEAFRTYIRDGLAQVRVHHQMEKNAAAGRTPSSMPMATPPPSALNASSPDFVPLSPGQTNSLSDAKSLHVKSEPTN FHLPPAYGEDSRGVNILASRGLISENSLGDQRNEKFMSGVTSGTLDAIRERMKSMQLAATGGNPDSGNTTRPLMSMNDNINNTLTFQVPRSAEPVNAENP AQAGIHPMDEKALSGLQARMERLRSGSMDTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10023398 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10026971 [exp]	3.9	0.7628
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	23.9	0.7276
AT2G26270			unknown protein		Lus10038079 [exp]	34.5	0.6594
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	42.8	0.6842
AT5G42140			Regulator of chromosome conden...		Lus10042800 [exp]	58.0	0.6652
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	67.7	0.6629
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	70.7	0.6532
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	76.5	0.6530
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	84.5	0.6546
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	102.8	0.6319

Compare expression of checked genes

Lus10023398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.