Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39705 80 / 6e-21 RTFL8, DVL11 DEVIL 11, ROTUNDIFOLIA like 8 (.1) AT3G55515 67 / 6e-16 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT2G36985 53 / 8e-11 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) AT3G14362 52 / 2e-10 DVL19, RTFL10 DEVIL 19, ROTUNDIFOLIA like 10 (.1) AT2G29125 52 / 8e-10 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT1G53708 51 / 1e-09 RTFL9 ROTUNDIFOLIA like 9 (.1) AT4G13395 50 / 1e-09 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT1G13245 49 / 3e-09 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1) AT3G25717 47 / 1e-08 RTFL16, DVL6 DEVIL 6, ROTUNDIFOLIA like 16 (.1) AT5G59510 49 / 2e-08 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002705 [exp] 92 / 2e-25 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10040784 [exp] 57 / 1e-11 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10021966 [exp] 52 / 2e-10 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10041259 [exp] 51 / 7e-10 AT1G53708 70 / 2e-17 ROTUNDIFOLIA like 9 (.1) Lus10026526 [exp] 49 / 4e-09 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Lus10001569 [exp] 50 / 9e-09 AT5G59510 79 / 8e-20 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10034272 [exp] 47 / 2e-08 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10028393 [exp] 47 / 4e-08 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10041846 [exp] 45 / 1e-07 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057800 [exp] 95 / 4e-27 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.010G201700 [exp] 95 / 4e-27 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G035900 [exp] 63 / 9e-15 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.001G242800 [exp] 64 / 1e-14 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.010G226250 [exp] 62 / 2e-14 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.002G235101 [exp] 58 / 2e-12 AT1G53708 75 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.001G161200 [exp] 57 / 5e-12 AT1G53708 76 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.003G073900 [exp] 54 / 4e-11 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1) Potri.006G125600 [exp] 53 / 8e-11 AT2G36985 75 / 3e-20 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.009G034300 [exp] 52 / 5e-10 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10023399 pacid=23160559 polypeptide=Lus10023399 locus=Lus10023399.g ID=Lus10023399.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCCTGTAGTACCACGACGACGCTCCCTCACGCCACCACTGCTCCTCCCCCTCACTTCTACCTCGACGACAAGTGGAAGCTCTCCAAGAAGG AATCCTCCTCCAGTAGCTCCCGCTCCTCCTCCGCCGTCGTCGCTTCTTCCTCCTCCACCACCACCACCACGACGCCTCTGATGAAGAATTCATCGCAGCG GCGGAGGTGCTCCTTCTCGAGGAAATGCGCCAGGCTTGTCAAGGAACAGCGCGCCAGGTTCTACATCATGCGCAGGTGCGTCACCATGCTCATCTGCTGG CGCGATTACAGCGATTCGTGA
AA sequence Show only first row Show all	>Lus10023399 pacid=23160559 polypeptide=Lus10023399 locus=Lus10023399.g ID=Lus10023399.BGIv1.0 annot-version=v1.0 MAAACSTTTTLPHATTAPPPHFYLDDKWKLSKKESSSSSSRSSSAVVASSSSTTTTTTPLMKNSSQRRRCSFSRKCARLVKEQRARFYIMRRCVTMLICW RDYSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10023399 [exp]	0	1
AT2G41610			unknown protein		Lus10030172 [exp]	12.8	0.9170
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026656 [exp]	13.0	0.9159
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	19.5	0.9156
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10005303 [exp]	23.3	0.8212
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	24.9	0.9150
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	25.9	0.9083
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	27.0	0.9123
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10015069 [exp]	30.0	0.8884
AT1G17270			O-fucosyltransferase family pr...		Lus10003929 [exp]	32.6	0.9040
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008801 [exp]	35.1	0.8431

Compare expression of checked genes

Lus10023399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.