Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12380 456 / 4e-155 ATARP5 actin-related protein 5 (.1.2) AT3G12110 164 / 2e-46 ACT11 actin-11 (.1) AT5G09810 162 / 9e-46 ACT2/7, ACT7 actin 7 (.1) AT2G42100 162 / 9e-46 Actin-like ATPase superfamily protein (.1) AT3G53750 162 / 1e-45 ACT3 actin 3 (.1) AT2G37620 162 / 1e-45 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT1G49240 157 / 5e-44 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 157 / 6e-44 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT3G46520 156 / 1e-43 ACT12 actin-12 (.1) AT5G59370 155 / 4e-43 ACT4 actin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040281 [exp] 840 / 0 AT3G12380 446 / 3e-151 actin-related protein 5 (.1.2) Lus10006784 [exp] 164 / 1e-46 AT5G09810 769 / 0.0 actin 7 (.1) Lus10005819 [exp] 164 / 1e-46 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 164 / 1e-46 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 164 / 1e-46 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 164 / 3e-46 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 164 / 3e-46 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 164 / 3e-46 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 160 / 3e-45 AT3G12110 766 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202000 [exp] 476 / 5e-163 AT3G12380 998 / 0.0 actin-related protein 5 (.1.2) Potri.001G309500 [exp] 164 / 2e-46 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 164 / 2e-46 AT5G09810 774 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 163 / 3e-46 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 163 / 3e-46 AT3G12110 765 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 162 / 6e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 162 / 6e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G139900 [exp] 159 / 2e-44 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 157 / 5e-44 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 149 / 9e-41 AT5G09810 731 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10023400 pacid=23160606 polypeptide=Lus10023400 locus=Lus10023400.g ID=Lus10023400.BGIv1.0 annot-version=v1.0 ATGCCATTCATATCGCAGATACAGAGGCAGTCCGATTACTCACTCATCCCTTCCCACACCCCAATCGTCATCGACAACGGCGCTTCCTATTTCCGCATCG GGTGGGCTGGAGAGACCGAACCTCGGATTATTTTCCGCAACATTGTCCAGAGGCCTCGCCATAAGGCCACCGGTGAAACGGTGACTATTGTTGGTGACCA TGACCCAGCATTACTGAGATACTTTGACTGCACTCGGTCTGGGCCGCGCTCTGCTTTTGAAAACAATGTTGTTTTCCAGTTTGAGATAATGGAATATATT CTCGACTTTGCTTTTGACCGGCTTGGAGCAAATGGTTCACAGATTGATCATCCTGTCCTGATCACTGAATGTGCCTGCAATCCAGTACATTCCCGCAGTA AAATGGCAGAGCTTTTGTTTGAGACGTATGGAGTTCCATCAGTTGCATTTGGGGTTGATGCGGCATTCAGCTACAAGTACAATCAACAGCAGGGAGTTTG CAATCAAGATGGGCTTGCTATATGTCCTGGATTTAATACAACCCACGTTATTCCTTTCATTGCTGGAGAGCCAGTTTATAAAGGATGTTCGCGGACTAAC ATTGGTGGCTATCATGTTACTGACTACATGAAGCAACTGCTTGCACTGAAGTACCCTCATCACTTGGCCCGATTTACATGGGAGAAGGTTGAAGACCTAA AAATGGAGCACTGCTATATTGCATCAAACTATGCTTCAGAAGCCCAGTTTTTTCAGGAAATAGACCCAACATTTGTGCCGAAATCAGAAGCAGGAACCTC CCAGCCTACTTCTGAGGTACCGAAGCTCCGTCCACTAACCCAGGAAGACTTCAAGATTGTGTTTGGGGTCGAAAGGTTTCGATGCCCTGAAATCCTTTTT AATCCCAACCTAGTGGGGATCGATCAGGCCGGAGTGGATGAGATGGCAGGAGTTTCGATCAGGAGGTTGCCGGACAAGGATGAGGAATTGGAGAAGAAAT TGACGAGCTCGATTCTTATGACTGGCGGAAGCTGCTTGTATCCCGGTATGTGCGAGAGATTGGAAGCTGGGATTCGGATGATTCGGCCATGTGGAGCCCC GATTAAGGTAGTGAGAGCACTGGATCCAATTCTTGACGCTTGGCGAGGAGCTTCGGCATATGCTTCAGCAGCGCAGTTTCCCCAGCAAACTTTTACCAGA AAGGATTATTTCGAGAAAGGTGAAGATTGGCTTCGCGGATACAAGTTTCGGTACACTTTGTAA
AA sequence Show only first row Show all	>Lus10023400 pacid=23160606 polypeptide=Lus10023400 locus=Lus10023400.g ID=Lus10023400.BGIv1.0 annot-version=v1.0 MPFISQIQRQSDYSLIPSHTPIVIDNGASYFRIGWAGETEPRIIFRNIVQRPRHKATGETVTIVGDHDPALLRYFDCTRSGPRSAFENNVVFQFEIMEYI LDFAFDRLGANGSQIDHPVLITECACNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQQGVCNQDGLAICPGFNTTHVIPFIAGEPVYKGCSRTN IGGYHVTDYMKQLLALKYPHHLARFTWEKVEDLKMEHCYIASNYASEAQFFQEIDPTFVPKSEAGTSQPTSEVPKLRPLTQEDFKIVFGVERFRCPEILF NPNLVGIDQAGVDEMAGVSIRRLPDKDEELEKKLTSSILMTGGSCLYPGMCERLEAGIRMIRPCGAPIKVVRALDPILDAWRGASAYASAAQFPQQTFTR KDYFEKGEDWLRGYKFRYTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10023400 [exp]	0	1
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	7.0	0.8851
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	8.8	0.8443
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	11.0	0.8454
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10042891 [exp]	13.9	0.8683
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	15.9	0.8451
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	17.1	0.8669
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	18.5	0.8667
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	19.2	0.8559
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	29.4	0.8486
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	30.5	0.8411

Compare expression of checked genes

Lus10023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.