Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13840 525 / 0 FZR3 FIZZY-related 3 (.1.2) AT4G11920 416 / 7e-143 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT4G22910 402 / 4e-137 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G33270 248 / 2e-77 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 246 / 8e-77 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27570 236 / 1e-73 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G26900 228 / 3e-70 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 223 / 8e-68 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27945 199 / 3e-59 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 69 / 1e-12 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040282 [exp] 690 / 0 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10001192 [exp] 357 / 4e-119 AT4G22910 734 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10024482 [exp] 357 / 4e-119 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Lus10037593 [exp] 251 / 4e-79 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 248 / 2e-77 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 251 / 3e-75 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 234 / 6e-73 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 228 / 4e-70 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 234 / 7e-69 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202100 [exp] 596 / 0 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 573 / 0 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.003G119500 [exp] 382 / 2e-129 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.001G112700 [exp] 380 / 2e-128 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.013G048900 [exp] 256 / 1e-80 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 256 / 2e-80 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 248 / 7e-78 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 244 / 7e-76 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 194 / 4e-57 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 67 / 1e-11 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023401 pacid=23160604 polypeptide=Lus10023401 locus=Lus10023401.g ID=Lus10023401.BGIv1.0 annot-version=v1.0 ATGGAAACGCCACCGAGAAGGAAGAGCAGCGGGCTCAACCTCCCAGCTGGGATGAACCAGACTTCCCTCCGCCTTGAAACCATCTCCAAGAAATCTCCAT CTCCTTCCTCCCCTGCGTTTCGCGTCGTCTCGGTGTCCTCCCCGCGGGAGATCGCCAGCCTCTCGTCGCCGTCGTCCAAAACCTCCACTTGCGGCGATCG GTTCATACCTTGCCGATCGGCTTCCAGGCTGCACACCTTCGGGCTTCTGGATACGCCGCCGTCTGGTTCCCCTGTTAAAGAAGGAGGAGGAGGGAGTGAT AGCACTTACGCTAGATTACTGAAGTGTGAGCTTTTCGGATCTGATTTTGCCTCTTCTTCCCCTGCAGGTGGTTTGGGAAGTCCGAATATGCTGAGATTCA AGAAGGATCATTCCGGTGGACCTAATTCTCCGTACTCGCCATCGATTCTGAGGCAGGATAGTGGAGGTAGCAACGAAGGTTCGACGCCGCCTAAGCCTTC TAGGAAGGTCCCCAAGACTCCTCACAAGGTTTTGGATGCACCATCTTTGCAAGATGACTTCTATCTGAACGTGGTGGATTGGTCCTCTCAGAACGTTCTT GCTGTTGGGTTGGGAACTTGTGTTTATTTATGGTCCGCATCAAACAGCAAAGTGACCAAGTTGTGCGATTTAGGACCTAATGACAGTGTGTGTTCAGTTC AATGGACCAAGGAAGGTTCCTACATATCACTTGTTTGCCATAAATCTGAGGTATGTGGGTTGAAATGGTCTCACGATGACAGAGAGCTCGCATCTGGTGG AAATGACAATCAGCTCCTAGTATGGAACCAGCATTCGCAGCAGCCGATTCTGAAGCTGACAGAGCACACAGCTGCAGTGAAGGCAATTGCATGGTCACCT CACCAGAGTGGTCTCCTTGCATCTGGAGGTGGAACTGCAGACAGATGCATTCGTTTCTGGAACACCACCAGTGGCCACCAGTTGAACCATATCGATACCG GTAGCCAGGTATGCAATCTTGGGTGGAGCAAGAACGTGAATGAGTTGGTGAGCACTCATGGCTATTCCCAGAACCAAATCATGGTGTGGAAGTATCCATC TTTGTCAAAGGTTGCAACTCTAACAGGACACAGTTTGCGGGTTCTGTACCTTGCCATGTCACCTGACGGCCAGACCATAGTAACTGGAGCAGGAGATGAA ACTTTGCGGTTCTGGAATGTCTTCCCATCCATGAAAGCACCTGCGCCAGTTAAAGACACAGGCCTTTGGTCACTGGGACGGACGCACATTCGATGA
AA sequence Show only first row Show all	>Lus10023401 pacid=23160604 polypeptide=Lus10023401 locus=Lus10023401.g ID=Lus10023401.BGIv1.0 annot-version=v1.0 METPPRRKSSGLNLPAGMNQTSLRLETISKKSPSPSSPAFRVVSVSSPREIASLSSPSSKTSTCGDRFIPCRSASRLHTFGLLDTPPSGSPVKEGGGGSD STYARLLKCELFGSDFASSSPAGGLGSPNMLRFKKDHSGGPNSPYSPSILRQDSGGSNEGSTPPKPSRKVPKTPHKVLDAPSLQDDFYLNVVDWSSQNVL AVGLGTCVYLWSASNSKVTKLCDLGPNDSVCSVQWTKEGSYISLVCHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPILKLTEHTAAVKAIAWSP HQSGLLASGGGTADRCIRFWNTTSGHQLNHIDTGSQVCNLGWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLTGHSLRVLYLAMSPDGQTIVTGAGDE TLRFWNVFPSMKAPAPVKDTGLWSLGRTHIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	0	1
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10040282 [exp]	1.4	0.9775
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	2.4	0.9732
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	4.2	0.9726
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	7.7	0.9511
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	8.0	0.9687
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	9.5	0.9659
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037595 [exp]	11.1	0.9391
					Lus10001684 [exp]	11.8	0.9570
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041887 [exp]	12.2	0.9610
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	12.4	0.9573

Compare expression of checked genes

Lus10023401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.