Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1) AT4G25730 73 / 1e-14 FtsJ-like methyltransferase family protein (.1) AT5G01230 57 / 3e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040283 [exp] 439 / 1e-158 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023555 [exp] 70 / 2e-13 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10040439 [exp] 70 / 3e-13 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10017186 [exp] 52 / 1e-07 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021124 [exp] 49 / 1e-06 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202200 [exp] 345 / 4e-121 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1) Potri.009G118400 [exp] 73 / 1e-14 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.019G056300 [exp] 54 / 3e-08 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10023402 pacid=23160594 polypeptide=Lus10023402 locus=Lus10023402.g ID=Lus10023402.BGIv1.0 annot-version=v1.0 ATGGTTGGTGCCGGAGCACCTGATTTCTTCTACAAAGAAGCTCAGCGCCTCGGCTACGTAGCACGCTCTGGTTTCAAGCTTCTTCAGATACAGAATAAGC ACAAGCTGATAACTCCTGGATCATCTGTTCTTGATCTAGGTTGCGCCCCGGGAGCATGGCTTCAGGTGGCGTGCCAGAGGATAGGTCCGTTAAAAAGTGG TGGGGCGATAGTAGGAATTGATCTCAAGAAAGTGAAGGTTCCTTCAACTCACTGTGATGCAAGGGTTCAGACTGTTTCAGCTGATGTGATGAAGCTTCAC AAGGATGAAGTTAGGGCTCTCTCCCCTAAGTATTACTTCGTGCTCCCCATGAATTTGCATCTTGTGCTAGTTGTGGCTGTTCTTACCTTTGTTTCACAAA AAGGATTTTCGATCATATTATCAGACATGTGCCCTTCAGTCTCTGGGATTACAACCAAAGATGCAGCATTGTCAATGGAGCTAGGAATGCGAGCACTCGA GCTCGCTGTTGGTAGAACAGCAGCATCGGTCCTTCCTGATGATCAAGAAGCTGAATTGCTGGTAGATGAATCATCTGCTTCTGATACAAATGGTAGAGGT GTACTGTTGTCGGGTGGCAACCTAGTAATCAAGCTTCTAGAGAGCGAGGTTATCCAGGAATTCAGCAAGATTTGCAAGCCGCTCTTCAGAAAAGCGTCGT GGCTACGGCCCAAGGCAACAAGATCGACGTCGAGAGAGATCTACTTGATATGTCAAGGCTTTCAGTAG
AA sequence Show only first row Show all	>Lus10023402 pacid=23160594 polypeptide=Lus10023402 locus=Lus10023402.g ID=Lus10023402.BGIv1.0 annot-version=v1.0 MVGAGAPDFFYKEAQRLGYVARSGFKLLQIQNKHKLITPGSSVLDLGCAPGAWLQVACQRIGPLKSGGAIVGIDLKKVKVPSTHCDARVQTVSADVMKLH KDEVRALSPKYYFVLPMNLHLVLVVAVLTFVSQKGFSIILSDMCPSVSGITTKDAALSMELGMRALELAVGRTAASVLPDDQEAELLVDESSASDTNGRG VLLSGGNLVIKLLESEVIQEFSKICKPLFRKASWLRPKATRSTSREIYLICQGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	0	1
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	1.7	0.8095
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	3.0	0.7539
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	12.5	0.7177
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	13.8	0.7182
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	14.6	0.7545
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	18.7	0.6649
AT1G50910			unknown protein		Lus10011153 [exp]	19.0	0.7262
AT4G14000			Putative methyltransferase fam...		Lus10008886 [exp]	20.1	0.6972
AT5G66540			unknown protein		Lus10042107 [exp]	23.9	0.6900
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	25.9	0.6558

Compare expression of checked genes

Lus10023402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.