Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13820 384 / 9e-125 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 363 / 3e-117 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT3G46590 295 / 8e-92 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT1G07540 288 / 3e-88 MYB TRFL2 TRF-like 2 (.1) AT5G59430 239 / 1e-70 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 161 / 5e-44 MYB TRFL4 TRF-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040285 [exp] 1130 / 0 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10002704 [exp] 746 / 0 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 741 / 0 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040795 [exp] 279 / 8e-85 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10016527 [exp] 270 / 5e-81 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10024385 [exp] 230 / 3e-66 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 225 / 2e-64 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10037678 [exp] 43 / 0.001 AT1G72650 341 / 2e-109 TRF-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202400 [exp] 617 / 0 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 611 / 0 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.009G032000 [exp] 425 / 5e-140 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.001G241600 [exp] 400 / 3e-130 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.006G086500 [exp] 297 / 3e-91 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 43 / 0.0007 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023406 pacid=23160553 polypeptide=Lus10023406 locus=Lus10023406.g ID=Lus10023406.BGIv1.0 annot-version=v1.0 ATGGTGTTGAAGAAGAGGCAGCATCATGGTATTAGCGGTGTCCACTTCCCTTTTGTCCCCAAAGCTCCCAGATCTGCTAGAAGGGGTTTTCATAAGAGGA TCGTTGAGGATAGTCAACTGTGCGCATTTGAGTTGCTTGCTTCTTTAGCAGGACAGCTATTGATGGAGACCGAAAGCTCATCGGCTTCTAGTAATGCTTC CGATGCAGCAAATGGTCGTCCTGCAATTAGTGATGATCTCGTCAAAAGAGAGCAAGTTGAAGAAACTCACCCTGTGAAAACTGAGCGCTTTGATCTGGGT AGCTGTGAAGAGAGTATTTTCCTCCCCAATTTAAAGGACACTCCACCACCTGCTGAGAGTGATTCCATTCTGGAACGCTTTTCAACAGTCTCAAAATCTG ATTCGTCAGTGAAAGTCAGTTGTGATGAGAAGCCCATCCTATGTGAGAAATTACCTGCTGAGGTGGAAGGAGACTCTCCTGCTTCTGTAGAGCCACGTGA TGGATATTTAAAAAGTGGACTCAGAAGACAGTTACTTGCTGATGGGCTGGAAACTGGAGGGTCAATGCTTGGTAATGCCTGCATTTCAAATGATCCCGAG AAGTCATGTATGAAGAATCCTGCATTGATCAAAGGCAACAATGTGAAATTAGATGTTAAAGATGATGATGAAAATTTATTTAGGTCTAATAATAAGCAAA GCAACCAGAGAAAGGCTTTCAGGCCTTCTTCGCGAATTGGAGACAGAAGAATAAGAAAGTTACTGTCATCCAAATACTGGAAATCAGCTCCTAAACTGAA AGACTACGAACTAACCAGACCCGCAATTGGAGACGGGGGAATGAAGCCTCTCTATCACAAGAGGAAGGTGGCTTGCAATTACGATAGACGTCAGTATGAC ATTCTTTATAAAAGGAGGAAGCTTTCTGACCGTAGCTTAGTAATAGCTTCCGATGGGGGTTTTAGCAGCGAAAGTGTTTGTAATTCACCAGGAAAAGGCA TGTCAGTTGACAATGGCTCAGGAGTCATGTTAAATAGAGAAAATGGCATGTCGTCCCCAGTTATTGGCCATCAAGGGCAGCTCCACCCAAAGGATTCTCA TGTTAAACTGAGCATCAAGTCCTTCAAAATTCCAGATCTTCTCATTGAGGTCCCAGAAACTGCAACTGTTGGCTCGCTGAAGAGAACTATTGTGGAGGCT GTCTCCGCCATACTTGGTGGTGGTTTACGTGTTGGGGTTATTCACCATGGAAAGAAGGTTAGAGATGATAACAGAACCCTTTTGCAGACTGGCATCTCTT CTTCAGAAAATCTCGACTCTCTGGGATTTACTTTGGAGCCTAGTTCAGTGCAAGCGCCTGCACCATTGTGCACTGAAGAGCTTCCTGCCATCTTACCGTC TCATACTTCCCAGCTCATATCGAGGACCCCAGCCACTACGATTGTAGAGTCACAGAATCCTAAAGACTCTCCGTACATTACCCTTCCACTGCCAGCAAAT CTGGCTGACAATATTAACACTAAACATGAACCACATTCCACTAATGAGAACAAATCACCATCAGATGATTCCAAAGCTCTGGTTGCAGTTGAGCAAGCGA GCAGCGAACCACTCCGAGCAGGGAACCACTCGCTGTTCTCCCACATAACCAGAAATGTAGGCGGTCAGAAAATGTCCAGCGTCGAACCAGAAGACCGTTC TCGGTCTCGGAAGTGGCGTGATGTTAAGTTACGATCTTTCGACAATGCTGACCATCGGACCTATGTCGACTTGAAGGACAAATGGAAGACATTGGTCCAC ACAGCAAAGATAGCTCCACAGCAAAGACGCGGGGAACCAGTTCCGCAGGAACTTCTGGACCGAGTTCTGGCTGCTCACGGCTACTGGTCTCAACATCAAG CCAGGCAACAAACTAAAATCCAAGCTGCTAATGCGACAGCCATCTCCGCCGTCCTCCAGATAACAGATGGCCAGACGGTCTAG
AA sequence Show only first row Show all	>Lus10023406 pacid=23160553 polypeptide=Lus10023406 locus=Lus10023406.g ID=Lus10023406.BGIv1.0 annot-version=v1.0 MVLKKRQHHGISGVHFPFVPKAPRSARRGFHKRIVEDSQLCAFELLASLAGQLLMETESSSASSNASDAANGRPAISDDLVKREQVEETHPVKTERFDLG SCEESIFLPNLKDTPPPAESDSILERFSTVSKSDSSVKVSCDEKPILCEKLPAEVEGDSPASVEPRDGYLKSGLRRQLLADGLETGGSMLGNACISNDPE KSCMKNPALIKGNNVKLDVKDDDENLFRSNNKQSNQRKAFRPSSRIGDRRIRKLLSSKYWKSAPKLKDYELTRPAIGDGGMKPLYHKRKVACNYDRRQYD ILYKRRKLSDRSLVIASDGGFSSESVCNSPGKGMSVDNGSGVMLNRENGMSSPVIGHQGQLHPKDSHVKLSIKSFKIPDLLIEVPETATVGSLKRTIVEA VSAILGGGLRVGVIHHGKKVRDDNRTLLQTGISSSENLDSLGFTLEPSSVQAPAPLCTEELPAILPSHTSQLISRTPATTIVESQNPKDSPYITLPLPAN LADNINTKHEPHSTNENKSPSDDSKALVAVEQASSEPLRAGNHSLFSHITRNVGGQKMSSVEPEDRSRSRKWRDVKLRSFDNADHRTYVDLKDKWKTLVH TAKIAPQQRRGEPVPQELLDRVLAAHGYWSQHQARQQTKIQAANATAISAVLQITDGQTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	0	1
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	2.0	0.8599
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10038176 [exp]	4.5	0.8374
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	4.7	0.8489
AT1G03080			kinase interacting (KIP1-like)...		Lus10022079 [exp]	4.9	0.8461
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	4.9	0.8282
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10021570 [exp]	6.5	0.8486
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	8.5	0.8265
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	10.2	0.7897
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	10.4	0.8096
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	11.0	0.8349

Compare expression of checked genes

Lus10023406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.