Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 439 / 3e-158 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G28950 425 / 2e-152 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT2G37640 419 / 3e-150 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 419 / 5e-150 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 406 / 4e-145 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT1G69530 348 / 3e-122 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G56320 344 / 1e-120 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G03090 342 / 1e-119 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G05290 337 / 9e-118 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 332 / 7e-116 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040286 [exp] 494 / 2e-179 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10040801 [exp] 452 / 6e-163 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 452 / 6e-163 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10024388 [exp] 423 / 2e-151 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010841 [exp] 365 / 3e-124 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10034227 [exp] 351 / 3e-123 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 350 / 6e-123 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10036763 [exp] 350 / 8e-123 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10042214 [exp] 348 / 7e-122 AT2G40610 393 / 7e-140 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202500 [exp] 453 / 1e-163 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G031800 [exp] 447 / 3e-161 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.008G057100 [exp] 447 / 6e-161 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.001G240900 [exp] 443 / 2e-159 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.006G086100 [exp] 431 / 7e-155 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.006G108000 [exp] 362 / 1e-127 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 362 / 2e-127 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 358 / 6e-126 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.008G088300 [exp] 346 / 3e-121 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 346 / 3e-121 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10023407 pacid=23160577 polypeptide=Lus10023407 locus=Lus10023407.g ID=Lus10023407.BGIv1.0 annot-version=v1.0 ATGAGGACTTCAGCTCTGTGTGCTCTGTCTTTTGCTCTGCTTTTCCTCTCTGCAGAAATCACCATTGTCGAATCCAGAATCCCTGGAAATTACATGGGCG GCGCGTGGCAATCCGCCCACGCCACTTTCTACGGCGGCTCCGACGCTTCAGGCACAATGGAGGGAGCGTGTGGGTACGGAAACCTATACAGCCAGGGCTA CGGAGTAAACACCGCGGCACTAAGCACAGCCCTATTCAACAACGGTCTAAGTTGCGGTGCATGCTTCGAAATCAAATGCGCAAACGACCCGCAGTGGTGC CATTCGGGCAGCCCCTCGATACTCATCACAGCCACAAACTTCTGCCCGCCCAATTTTGCCCAACCCAGTGACAATGGCGGGTGGTGCAACCCTCCCCGCC CCCATTTCGACCTCGCAATGCCGATGTTTCTCAAGATTGCAGAGTACAGGGCTGGGATCGTGCCAGTTTCATTCCGGAGGGTTGCGTGCAGGAAGCAAGG AGGGATCAGGTTCACGATCAACGGGTTCAAGTACTTCAATTTGGTACTTGTGACTAACGTGGCCGGAGCAGGGGATGTTGTGAAGGTTTGGGTGAAAGGG AGTAAGACAGGTTGGATGAGTATGAGTAGGAATTGGGGTCAGAATTGGCAGTCGAATTCGATTTTGGCTGGACAGTCTTTGTCGTTTCGGGTTAGTTCGA GTGATCACCGGACTTCTACTTCTTGGAATGTTGTTCCTGCTGGGTGGCAGTTTGGTCAGACTTTTACCGGCAAGAATTTCAGGGTCTAG
AA sequence Show only first row Show all	>Lus10023407 pacid=23160577 polypeptide=Lus10023407 locus=Lus10023407.g ID=Lus10023407.BGIv1.0 annot-version=v1.0 MRTSALCALSFALLFLSAEITIVESRIPGNYMGGAWQSAHATFYGGSDASGTMEGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWC HSGSPSILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVACRKQGGIRFTINGFKYFNLVLVTNVAGAGDVVKVWVKG SKTGWMSMSRNWGQNWQSNSILAGQSLSFRVSSSDHRTSTSWNVVPAGWQFGQTFTGKNFRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	0	1
AT1G09812			unknown protein		Lus10037361 [exp]	1.7	0.9251
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	2.8	0.9083
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	4.2	0.9048
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	6.0	0.8827
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	8.5	0.8742
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	9.3	0.8576
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	12.4	0.8866
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Lus10014807 [exp]	13.6	0.8942
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	13.8	0.8854
AT2G33850			unknown protein		Lus10018650 [exp]	17.5	0.8833

Compare expression of checked genes

Lus10023407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.