Plant FIBer expression Database

Lus10023409 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G12540 49 / 1e-06 Protein of unknown function, DUF547 (.1)
AT3G47675 44 / 8e-06 unknown protein
AT2G39690 40 / 0.0007 Protein of unknown function, DUF547 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040290
[exp]
325 / 3e-114 AT3G12540 56 / 5e-09 Protein of unknown function, DUF547 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G202900
[exp]
152 / 2e-43 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2)
PFAM info
Representative CDS sequence
>Lus10023409 pacid=23160584 polypeptide=Lus10023409 locus=Lus10023409.g ID=Lus10023409.BGIv1.0 annot-version=v1.0
ATGAAGTTTGAAGATTACTTGGAGGAGCAAGCCGACGAGAAACATCACCAGCAGAGGAGGAGAAACATCCTGGAAGAAGAGGTCGAGAACCTCCACGCAG
AATTGGACGAGCAGCAAGCTATCAGTAAAGTTTTCAAGTCCGCGCTTCGCGGTCCTGTGCTACCGCCTCATCCCTGCATTGCTTCGTTGCTTCCGCCTGA
AGTACAGGGGCTTCTTGCGAAGAAGGCGATCATGGAGGAGGAAATCGTGTGGCTCGAGAGGAAAGTCAACGACCTCAAACTCGGACTTTACTACGAACGG
AAGCTGATTAAAAAACAGCAGAGACAGAAATCAAAGCAGCAGAGTCGCTTGCTGGTGTGTGAAGAAGAACGTGGAGAGAGTCGATCTGTGCTAGTTGGCG
ATCTCTACCAGGTGTCGAGGTCACAACGCCATGGCAGTTTCAGAAAGGAGAAGTTTAAGTTCAGAAGAGCTTCTGCTGGTTCTGCAGAAGAAGTTTTGTC
GTCCGTTCTTCCTACTACTGGTCCTTCTCTGAGTAAACCGAAGAAGACACACAGAGCAAGAGCGCCGGTAATGCAGAAAGAGTCGGTCCCTTATCTTATG
CACAGAGATATCAACCGAAGAAGACACACAGAGCAAGAGCGCCGGTAA
AA sequence
>Lus10023409 pacid=23160584 polypeptide=Lus10023409 locus=Lus10023409.g ID=Lus10023409.BGIv1.0 annot-version=v1.0
MKFEDYLEEQADEKHHQQRRRNILEEEVENLHAELDEQQAISKVFKSALRGPVLPPHPCIASLLPPEVQGLLAKKAIMEEEIVWLERKVNDLKLGLYYER
KLIKKQQRQKSKQQSRLLVCEEERGESRSVLVGDLYQVSRSQRHGSFRKEKFKFRRASAGSAEEVLSSVLPTTGPSLSKPKKTHRARAPVMQKESVPYLM
HRDINRRRHTEQERR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12540 Protein of unknown function, D... Lus10023409
[exp]
0 1
AT1G53120 RNA-binding S4 domain-containi... Lus10041931
[exp]
6.6 0.7685
AT1G32560 AtLEA4-1 Late Embryogenesis Abundant 4-... Lus10040088
[exp]
15.9 0.7461
AT5G39030 Protein kinase superfamily pro... Lus10027116
[exp]
22.3 0.7303
AT2G34930 disease resistance family prot... Lus10001035
[exp]
23.4 0.7579
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Lus10013100
[exp]
25.4 0.6983
AT5G50770 ATHSD6 hydroxysteroid dehydrogenase 6... Lus10016748
[exp]
29.9 0.7089
Lus10037345
[exp]
33.4 0.7092
AT1G20693 HMGBETA1, NFD2,... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10016025
[exp]
35.9 0.7086
AT3G11570 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 ... Lus10000250
[exp]
44.5 0.7107
AT5G44120 ATCRA1, CRU1, C... CRUCIFERINA, RmlC-like cupins ... Lus10024891
[exp]
45.2 0.7119

Lus10023409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.