Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55470 131 / 5e-40 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 64 / 7e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G00467 65 / 1e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G07940 41 / 0.0001 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040291 [exp] 238 / 5e-82 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 76 / 5e-18 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 75 / 6e-18 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014780 [exp] 55 / 6e-10 AT4G00467 168 / 1e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 42 / 6e-05 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 39 / 0.0003 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203000 [exp] 142 / 3e-44 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203100 [exp] 137 / 3e-42 AT3G55470 163 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G155600 [exp] 69 / 1e-15 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G084100 [exp] 69 / 3e-15 AT4G00467 194 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.016G005300 [exp] 40 / 9e-05 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G372000 [exp] 39 / 0.0005 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10023410 pacid=23160597 polypeptide=Lus10023410 locus=Lus10023410.g ID=Lus10023410.BGIv1.0 annot-version=v1.0 ATGGCGATTGGGATATTGGAGGTTAATGTGGTGAGCGCCAAAGGCCTCAGTAACACCGATTTCCTTGAGGCAGGTGGAAGTCCAGCGTGGAACGAGAAGT TGTCATTCAGGGCGGAATATCCAGCACCTCAAGGTGGCGACTACAAGCTCACCCTCAAGATCATGGACCACGACACTTTCACTACCGATGACTTCGTTGG CATGGCTACGATTCAGCAAGTGAAAGAAGTGTTGGAAACAGGGGTGGAGAAGGGGAGCTACGAGCTCCGACCTTGCAAGTACAGTGTGGTTACTGCTGAC AACTCTTACCGCGGCGAGATCAAAGTTGGTCTTACTTTCACCCTCAAGGCAGGGGATGGTGGCGATGGACAGCAGTTCGGTGGCTGGAGGGAAAGCAATT TCTAA
AA sequence Show only first row Show all	>Lus10023410 pacid=23160597 polypeptide=Lus10023410 locus=Lus10023410.g ID=Lus10023410.BGIv1.0 annot-version=v1.0 MAIGILEVNVVSAKGLSNTDFLEAGGSPAWNEKLSFRAEYPAPQGGDYKLTLKIMDHDTFTTDDFVGMATIQQVKEVLETGVEKGSYELRPCKYSVVTAD NSYRGEIKVGLTFTLKAGDGGDGQQFGGWRESNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	5.1	0.9225
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	5.5	0.9377
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	6.8	0.9006
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	13.4	0.8858
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10035286 [exp]	13.5	0.9088
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016469 [exp]	13.9	0.9201
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	15.0	0.8967
AT5G05340			Peroxidase superfamily protein...		Lus10029062 [exp]	15.2	0.9181
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	18.0	0.9093
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	19.8	0.8400

Compare expression of checked genes

Lus10023410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.