Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 297 / 8e-101 PLATZ transcription factor family protein (.1.2) AT1G76590 283 / 2e-95 PLATZ transcription factor family protein (.1) AT1G43000 238 / 7e-78 PLATZ transcription factor family protein (.1) AT4G17900 218 / 6e-70 PLATZ transcription factor family protein (.1.2) AT1G32700 211 / 3e-67 PLATZ transcription factor family protein (.1.2) AT5G46710 176 / 2e-53 PLATZ transcription factor family protein (.1) AT2G27930 137 / 4e-39 PLATZ transcription factor family protein (.1) AT1G31040 123 / 4e-33 PLATZ transcription factor family protein (.1) AT2G12646 119 / 3e-31 PLATZ transcription factor family protein (.1) AT3G60670 117 / 6e-31 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040292 [exp] 436 / 1e-155 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 351 / 8e-122 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 352 / 3e-121 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 216 / 4e-69 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 209 / 2e-66 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 199 / 2e-62 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 198 / 7e-62 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 195 / 3e-60 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 194 / 4e-60 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259000 [exp] 328 / 5e-113 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 326 / 3e-112 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 208 / 6e-66 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 206 / 4e-65 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 202 / 5e-64 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 201 / 1e-63 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 200 / 3e-63 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 199 / 2e-62 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.009G003200 [exp] 192 / 6e-60 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 191 / 2e-59 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10023411 pacid=23160501 polypeptide=Lus10023411 locus=Lus10023411.g ID=Lus10023411.BGIv1.0 annot-version=v1.0 ATGGTTTCCAACGTCGATGGTACCCCGACGGCGGAACCGGAAGGTCCCTGGAAAACAGTTGAGAAGAAACATCGTAATCCAAAAAAGGCAGGTTTTCAAA GCCCCGACGGCTCTTCGAGATTCGTGGGAGAAGGGAAAGGAAAGAAAAATCAGAGTCCTCCGATTGAGCCACCGAATGGCGTACTTCCTATGACCTTCCC CACTAGCCCAGGTGTGGCTTTCACTGTCATAATAATTCTTAAGTTATCCCCATTTTCCTCTGTTCTTTCTCAGGAGGGTTCTCAATCCAGGTCAACCAAA GGCTTCTGCTGGTTCATGGTGAGTCCAATCGACCGAATGGCGGCGGCCACCGGAGGCCAGCGGGACCTGGTTCCGGCGTGGTTGAAACCAATGCTGAAAG CAAGCTACTTTGTTCCTTGTAACGTCCATGGCGATTCCAGCAAGAGTACTGAATGCAATATGTTCTGCTTGGATTGCTCTGGGAATGCTCTCTGTTCTTA CTGTTTGATTAATCACAAGGACCATCAACTAGTTCAGATTCGACGGTCTTCATACCATAACGTGGTGAGAGTGATCGAAATACAAAAGTACATAGACATA TCTTGCATCCAAACCTACGTTATCAACAGTTCCAAGATTGTGTTCTTGAACGAGAGGCCTCAGTCGAGACCTGGGAAAGGAGTTACCAGTACTTGTGAGA TCTGTTCCAGGAGCCTCCTCGATTCATTTCGGTTCTGCTCTCTCTGCTGCAAGCTAGGAGGAGTGAAACAAGGAGATGATCAATCCCTCACATTCATGCT TGGAGAGAAACACAACAGAGATTGGATTCTCGGAGAAGGAGGGTCTGATTCAGATGAATCGTCCACTCCAAAGAAGATGCAAAGGACTAATCTTTTCAGC CGGATGATGGATAGGCTCTCAATTCATTCTCCGGAGGCTCATGATAGCTCTGGCGATGAGGCTGCTGCTGCCAATATTTTGCCAACTACTCCACCGATGT TCAATCATAGCAATGCCAGGAGACGTAAGGGTATACCTCACCGCGCCCCGTTTTGA
AA sequence Show only first row Show all	>Lus10023411 pacid=23160501 polypeptide=Lus10023411 locus=Lus10023411.g ID=Lus10023411.BGIv1.0 annot-version=v1.0 MVSNVDGTPTAEPEGPWKTVEKKHRNPKKAGFQSPDGSSRFVGEGKGKKNQSPPIEPPNGVLPMTFPTSPGVAFTVIIILKLSPFSSVLSQEGSQSRSTK GFCWFMVSPIDRMAAATGGQRDLVPAWLKPMLKASYFVPCNVHGDSSKSTECNMFCLDCSGNALCSYCLINHKDHQLVQIRRSSYHNVVRVIEIQKYIDI SCIQTYVINSSKIVFLNERPQSRPGKGVTSTCEICSRSLLDSFRFCSLCCKLGGVKQGDDQSLTFMLGEKHNRDWILGEGGSDSDESSTPKKMQRTNLFS RMMDRLSIHSPEAHDSSGDEAAAANILPTTPPMFNHSNARRRKGIPHRAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10023411 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	1.4	0.9154
AT1G33030			O-methyltransferase family pro...		Lus10009442 [exp]	3.6	0.9252
AT4G21920			unknown protein		Lus10002068 [exp]	4.0	0.9133
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10042493 [exp]	5.3	0.9039
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	5.7	0.9136
AT4G12410			SAUR-like auxin-responsive pro...		Lus10024600 [exp]	6.9	0.8954
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10003858 [exp]	11.0	0.8893
					Lus10028488 [exp]	12.0	0.8948
					Lus10012066 [exp]	16.1	0.8871
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10001640 [exp]	18.8	0.8783

Compare expression of checked genes

Lus10023411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.