Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39650 257 / 5e-85 Protein of unknown function (DUF506) (.1) AT4G14620 137 / 9e-38 Protein of unknown function (DUF506) (.1) AT2G38820 131 / 6e-36 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 126 / 1e-34 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G07350 117 / 6e-31 Protein of unknown function (DUF506) (.1) AT3G54550 117 / 1e-30 Protein of unknown function (DUF506) (.1) AT3G25240 111 / 1e-28 Protein of unknown function (DUF506) (.1) AT4G32480 108 / 2e-27 Protein of unknown function (DUF506) (.1) AT2G20670 105 / 3e-26 Protein of unknown function (DUF506) (.1) AT1G12030 98 / 1e-23 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040293 [exp] 532 / 0 AT2G39650 270 / 5e-90 Protein of unknown function (DUF506) (.1) Lus10002695 [exp] 388 / 2e-136 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 285 / 9e-97 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10039397 [exp] 141 / 2e-38 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 138 / 1e-37 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 135 / 4e-37 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 134 / 2e-36 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 132 / 1e-35 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 131 / 2e-35 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056100 [exp] 358 / 1e-124 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 325 / 2e-111 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 149 / 4e-42 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 143 / 7e-40 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 132 / 1e-35 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 124 / 1e-32 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 117 / 8e-31 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 112 / 4e-29 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 111 / 5e-29 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.011G023301 [exp] 110 / 6e-28 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10023412 pacid=23160528 polypeptide=Lus10023412 locus=Lus10023412.g ID=Lus10023412.BGIv1.0 annot-version=v1.0 ATGTGCGCGGCGACGGCGATGGGGGAGTGGTGGGCGAGAGGGATAGTGGGCCAGATCGGAGGAAGATTTAGCCACGAGAGCGAGCATGACTTGGCTTTTA TGGTCGGCGATTTCATCGAGAACGGCGGCAGCATCGGGGCTGAGTCATGGTGTAGTAGCGACAGCGAGTCAGGCCTCGTCGATCTCCATTCTCTTGCCGA TAAGATTACGCTGTATAAACGCTCAGTGTCCCCTTCCGAGAACGAATTGCTATCACTAGTCCATTCCCTCATTCTGTCGATCAGCGAAACCGACCTTCGT CTTTTGCACTCAGGTTCTTGCAATGCGAGCTGCATCAGGTTTCATTTGGTGAAACTCTTGAGATTTTATGGATACGATGCTGCTGTCTGTTCATCCAAGT GGCAGGGCATTGCCAAGGTCCCAGCAGGTGACTATGAATACATTGATGTGATCAAAAGTTCAGAACGTCTGATCATCGACATAGACTTCAGAAGCCACTT TGAAATAGCTAGAGCCGTCGATTCCTATGATCAGATCCTGCAGTTACTTCCAGTCGTCTATGTGGGATCCTTGACCAGGCTGAAGCGATACCTTCAAGTA ATGGTTGAAGCTGGCAGGTATTCACTCGAACAGCACTCAATGCCTCTTCCTCCGTGGAGATCTCTTGAGTATCTGCAAGCGAAATGGCAGTCTCCATATC AAAGGCAGTACGCTCCAGATAGCAGAATGGCCATCGCCGATGACCACAGGCAGTGTGGTGGGCATCTTAGAGAGTTGCAATCCTCTCTTCTCCATGAAGC AGAGGAAGAAGGCCTCTCGAAGCATGTGAACCAATTACACAAGAATAATTCTAGTAGGAAGGTGAAGGCGGAGATGCAGCGGAGATGCTCCTTTTTGCAG CGTGTATGA
AA sequence Show only first row Show all	>Lus10023412 pacid=23160528 polypeptide=Lus10023412 locus=Lus10023412.g ID=Lus10023412.BGIv1.0 annot-version=v1.0 MCAATAMGEWWARGIVGQIGGRFSHESEHDLAFMVGDFIENGGSIGAESWCSSDSESGLVDLHSLADKITLYKRSVSPSENELLSLVHSLILSISETDLR LLHSGSCNASCIRFHLVKLLRFYGYDAAVCSSKWQGIAKVPAGDYEYIDVIKSSERLIIDIDFRSHFEIARAVDSYDQILQLLPVVYVGSLTRLKRYLQV MVEAGRYSLEQHSMPLPPWRSLEYLQAKWQSPYQRQYAPDSRMAIADDHRQCGGHLRELQSSLLHEAEEEGLSKHVNQLHKNNSSRKVKAEMQRRCSFLQ RV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	0	1
AT3G52105			unknown protein		Lus10019704 [exp]	4.8	0.8760
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	5.7	0.8702
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	7.3	0.8735
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10014925 [exp]	7.7	0.8830
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	7.9	0.9057
AT1G11340			S-locus lectin protein kinase ...		Lus10007604 [exp]	9.2	0.8998
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	9.6	0.8704
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10035286 [exp]	15.5	0.8904
					Lus10038520 [exp]	15.9	0.9028
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	17.2	0.8698

Compare expression of checked genes

Lus10023412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.