Plant FIBer expression Database

Lus10023413 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55420 213 / 1e-69 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040295
[exp]
358 / 3e-126 AT3G55420 249 / 4e-84 unknown protein
Lus10005165
[exp]
269 / 2e-91 AT3G55420 245 / 2e-82 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G055800
[exp]
260 / 3e-88 AT3G55420 254 / 4e-86 unknown protein
Potri.010G203900
[exp]
256 / 1e-86 AT3G55420 253 / 7e-86 unknown protein
PFAM info
Representative CDS sequence
>Lus10023413 pacid=23160630 polypeptide=Lus10023413 locus=Lus10023413.g ID=Lus10023413.BGIv1.0 annot-version=v1.0
ATGGCGGAGAAGGAGAAGCAAAAGAATCAGAAGTCAGCCAATCACAAGAAGCCAAAAAACAAAGACCATCAACCGACATCGAAAAAATCACCCTCCGGCG
GCGGCGCGCTAGATTTATCTTTCAAGCCTAGCTCGGAAGTTAAAGGACTCCGATTCGGCGGCCAATTCGTCGTCAAATCATTCACAATCCGTCGCGCCAG
GCCAATCGAGCTCCTCAAGCTCCTCTCCTACCCTCCTCCTCCCTCAACATCATCCACCGCAGCCGACAAAAAACCCTCCAAATCCCCATTCCCCTCCACC
ACCGCCTTCCTCCCGACAAACTTCACGATCCTAGCCCACCACGCGTGGCACACGCTCACCCTCGGCCTGGGGACGAAGAAATCTAAAGTGGTGGTGTTCG
TGTTCGAATCGGAATCGTTGAAATCCGCCACCGCCGACAAGGCCTGGCCGGTGGAGATCCCGCTCGGGGAAGTGAACAAGAAGCTGATTCGCGGCCTGAA
AGGCTGCGAGGTTGCTAGGTTCAAGTTCCGGAAAGGCTGCATCACGTTCTACGTTTACGGCGTGAGGAAAGCAGGGAATCTAGGGTTCGGCGGCGGCGGC
GGCGAGGAGCTGAGAGTGATACTCCAGTCGGTTGCTTCACTGAACGATTTCTTGGACCATACCGCAATGCTCGCCATGCCTAATCAGCGCTCCATTAATT
ACTCCTCCTCTGCTTCTCAGCCTGTCGCCATGGCCCATTAA
AA sequence
>Lus10023413 pacid=23160630 polypeptide=Lus10023413 locus=Lus10023413.g ID=Lus10023413.BGIv1.0 annot-version=v1.0
MAEKEKQKNQKSANHKKPKNKDHQPTSKKSPSGGGALDLSFKPSSEVKGLRFGGQFVVKSFTIRRARPIELLKLLSYPPPPSTSSTAADKKPSKSPFPST
TAFLPTNFTILAHHAWHTLTLGLGTKKSKVVVFVFESESLKSATADKAWPVEIPLGEVNKKLIRGLKGCEVARFKFRKGCITFYVYGVRKAGNLGFGGGG
GEELRVILQSVASLNDFLDHTAMLAMPNQRSINYSSSASQPVAMAH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55420 unknown protein Lus10023413
[exp]
0 1
AT4G33625 unknown protein Lus10020442
[exp]
3.2 0.8115
AT2G26730 Leucine-rich repeat protein ki... Lus10033065
[exp]
8.9 0.8117
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Lus10031944
[exp]
10.2 0.8082
AT3G62980 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1... Lus10018425
[exp]
12.7 0.7525
AT5G61250 ATGUS1 glucuronidase 1 (.1.2) Lus10036962
[exp]
14.7 0.7782
AT1G53730 SRF6 STRUBBELIG-receptor family 6 (... Lus10003926
[exp]
16.4 0.7500
AT4G35550 HD HB-4, WOX13, AT... WUSCHEL related homeobox 13 (.... Lus10040447
[exp]
21.0 0.7877
AT4G31730 ATGDU1, GDU1 glutamine dumper 1 (.1) Lus10026911
[exp]
21.6 0.7365
AT2G18910 hydroxyproline-rich glycoprote... Lus10006958
[exp]
25.1 0.7772
AT1G50010 TUA2 tubulin alpha-2 chain (.1) Lus10035422
[exp]
26.7 0.7836

Lus10023413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.