Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39630 491 / 3e-176 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT1G20575 62 / 5e-11 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040296 [exp] 583 / 0 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 532 / 0 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 436 / 3e-151 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10013228 [exp] 60 / 3e-10 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10030748 [exp] 60 / 4e-10 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204000 [exp] 529 / 0 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.008G055700 [exp] 526 / 0 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.005G250900 [exp] 66 / 3e-12 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G010300 [exp] 64 / 1e-11 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10023414 pacid=23160491 polypeptide=Lus10023414 locus=Lus10023414.g ID=Lus10023414.BGIv1.0 annot-version=v1.0 ATGGAGTTCCTGCGCTCGATTGCACAGCTCTTCTTCACCTTCATTCTCCTCGTTGCTTCAATTTTACTCTCTGCTATAGTTTTCGAAGCCCACAGAAGAA GGAACAACAACAAGCACATTGATGCTCCTGCTATTTTCGAGGATCCGAATTCCTTGAAACAGGTTCCATGTCCACATCTAGTTGATCCTGCAGAAAAGTA CATATCGTTGATCGTTCCTGCATTCAATGAAGAACACAGGCTTCCTGCAGCTCTCGATGAAACAATTAATTATCTTCAACAACGTGCAGCAGAGGATGCC TCTTTTACTTATGAGGTATTGATCGTTGATGATGGAAGTGCCGATGCAACAAAAAGGGTAGCATTTGACTTTGTAAGGAAACACTCAGTGGACAAAGTAA GGGTTATCCTTCTTGGGAGAAATCACGGTAAAGGAGAAGCTATTAGAAAAGGAATGCTTCATTCACGTGGCGAACTACTTCTAATGCTGGATGCAGATGG GGCAACCAAGGTTAATGATCTTGAGAAGCTCGAAAAGAAGATCCGCGAAGTTGCAAATATTGAAGATACCACGTTTAGGATAGGTGACATCCCAGTAGCT GCATATGGTTCCAGAGCTCATCTCGAAGAAAAGGCTTTGGCTTCAAGGAAATGGTACCGTAATTTTTTGATGAAAGGCTTCCATGTGGTAGTTCTCTTGG CCTCCGGTCCCGGTATTCGCGATACACAGTGTGGCTTCAAGATGTTTACAAGGGCTGCAGCAAGAAAGCTTTTCACAAATATCAGGCTCAAAAGATGGTG CTTCGACGTTGAGCTGGTTTATCTCTGTAAACGGTTTGAGATCCCCATGGCGGAGATTTCTGTGAAGTGGTCGGAGATTCCGGGGTCCAAGGTCAATCTA CTAAGTATCCCCAACATGCTATGGGAGCTTGCTCTGATGACTGTGGGTTATAGGACTGCTATGTGGGAAATTTCCATTTGA
AA sequence Show only first row Show all	>Lus10023414 pacid=23160491 polypeptide=Lus10023414 locus=Lus10023414.g ID=Lus10023414.BGIv1.0 annot-version=v1.0 MEFLRSIAQLFFTFILLVASILLSAIVFEAHRRRNNNKHIDAPAIFEDPNSLKQVPCPHLVDPAEKYISLIVPAFNEEHRLPAALDETINYLQQRAAEDA SFTYEVLIVDDGSADATKRVAFDFVRKHSVDKVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVNDLEKLEKKIREVANIEDTTFRIGDIPVA AYGSRAHLEEKALASRKWYRNFLMKGFHVVVLLASGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFEIPMAEISVKWSEIPGSKVNL LSIPNMLWELALMTVGYRTAMWEISI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	0	1
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	2.4	0.7753
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	5.3	0.7778
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	15.2	0.7161
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	16.3	0.7088
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	16.9	0.7214
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	18.2	0.7216
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	24.7	0.7089
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	24.9	0.7017
AT3G51290			Protein of unknown function (D...		Lus10013564 [exp]	26.5	0.6789
AT1G05430			unknown protein		Lus10006108 [exp]	27.9	0.6907

Compare expression of checked genes

Lus10023414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.