Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 122 / 6e-34 ENTH/VHS family protein (.1) AT1G08670 100 / 6e-26 ENTH/VHS family protein (.1) AT3G23350 79 / 2e-17 ENTH/VHS family protein (.1) AT3G59290 44 / 3e-05 ENTH/VHS family protein (.1) AT2G43160 42 / 0.0002 ENTH/VHS family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040297 [exp] 345 / 7e-122 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 181 / 5e-54 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040824 [exp] 148 / 8e-44 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 146 / 9e-43 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10021173 [exp] 102 / 1e-25 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 100 / 5e-25 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10001692 [exp] 80 / 1e-18 AT3G46540 57 / 8e-10 ENTH/VHS family protein (.1) Lus10025527 [exp] 44 / 3e-05 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 44 / 4e-05 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030500 [exp] 157 / 5e-47 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 148 / 1e-43 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 119 / 5e-33 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 76 / 1e-16 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 47 / 4e-06 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 43 / 8e-05 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) Potri.014G151300 [exp] 43 / 9e-05 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10023415 pacid=23160572 polypeptide=Lus10023415 locus=Lus10023415.g ID=Lus10023415.BGIv1.0 annot-version=v1.0 ATGGGAGTCATCTCGAGGGCCGCTTTCGAAGTTGACGATTACTGGAGAATCGTCGGACTTGTACATGATAGGTTGATGAAGTTTGATGAGGATAGTTGGC AAGTCTCTTACAAGACATTGGTTCTACTAGAACACCTTCTCACTCATGGACCTCTGAGGATTGCTCAAGAATTCAAAAGGCAGAGGAATCTTATCAGAAA GATCGGCAATTCTCTCAGTTTCATCGACGAGAAAGGCTTTAATTGGGGATTGAAACTAAGAGACCTATCCAGAAGGGTGATAAGTCTACTAGAAGACGGC CCGCTTCTGATGCAAGAGAGAACAAGGCTTCGCAAATTAACACGAGGAATCCAAGGATTCGGAAGCTTCAATAACGACCAACACTTGCCATCGTCGCCAT TATCATCAGATTCGGAAGACGGTAGCCTGAGTCATTGTCATTCCACCGGCAACATAGCTCCTCGTTCCACCAGAGGCAGGGATGATTCCTTGGGTATCAA GACACTAATGAGGTGGAACTCCAACTATGATCCGTCAGGGGAAATGTATACACAACTGCCGGAGGATGAACCAGCAGAAGAAAACGATGTCGTTTGA
AA sequence Show only first row Show all	>Lus10023415 pacid=23160572 polypeptide=Lus10023415 locus=Lus10023415.g ID=Lus10023415.BGIv1.0 annot-version=v1.0 MGVISRAAFEVDDYWRIVGLVHDRLMKFDEDSWQVSYKTLVLLEHLLTHGPLRIAQEFKRQRNLIRKIGNSLSFIDEKGFNWGLKLRDLSRRVISLLEDG PLLMQERTRLRKLTRGIQGFGSFNNDQHLPSSPLSSDSEDGSLSHCHSTGNIAPRSTRGRDDSLGIKTLMRWNSNYDPSGEMYTQLPEDEPAEENDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46540			ENTH/VHS family protein (.1)		Lus10023415 [exp]	0	1
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	4.8	0.9578
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10036550 [exp]	5.3	0.9274
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	9.8	0.9443
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	15.2	0.9340
					Lus10041676 [exp]	16.1	0.9360
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	16.3	0.9397
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	17.3	0.9370
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	17.8	0.9393
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	21.0	0.9356
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	23.9	0.9275

Compare expression of checked genes

Lus10023415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.