Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 112 / 3e-31 Uncharacterised protein family (UPF0497) (.1) AT2G39518 110 / 9e-31 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040298 [exp] 268 / 1e-92 AT2G39518 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 62 / 5e-12 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031304 [exp] 56 / 1e-09 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 55 / 2e-09 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 48 / 7e-07 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 45 / 7e-06 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204700 [exp] 143 / 1e-43 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1) Potri.012G040100 [exp] 66 / 1e-13 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.016G128200 [exp] 42 / 6e-05 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10023416 pacid=23160500 polypeptide=Lus10023416 locus=Lus10023416.g ID=Lus10023416.BGIv1.0 annot-version=v1.0 ATGTCGGCACCATTTTCATACGAATCATACAACAACTCCTCCAGCTCCGTCCCTGTCGTCTCCTCCTCCTCCTCGAGGGTTTCACGAATGGTGGTGTTCG TGCTCAGGATACTGACCCTGATATGCCTCCTCATATCGATGGTGATCTTGACCACCAACACCGCCACCTTGCAAGTGTTCACCAACTTCTCCCCCACCAC CGGACCGACCATCGTCGGCATCAAGATACACTTCAAGGACATCTACACCTACCGGTATCTGCTGGGAGCGACGGTGGTTGGGATGGCGTACATGTTGCTT CAAATCGTGGTCACGCTGTGTTCGCTTGCTAAAGGGAGGAACGGCAGCCTTGTGTTTGACTTCTACGGCGACAAGGTGGTTTCGTACATACTGGCGACGG GTTCGGCGGCGGCGTTGGGGGCAACGAGGGACATGAAACCACTGTTCGCCGGAGTGGGAAACGTGGACAAGTTTTTCAACAGGGGATACGCTTCGGCCAG CGTCCTCTTCCTTGGATTCTTCTGCACTGCTATACTCTCTGTTATGTCGTCGTATGCCTTGCCCAAGAGGCACTAG
AA sequence Show only first row Show all	>Lus10023416 pacid=23160500 polypeptide=Lus10023416 locus=Lus10023416.g ID=Lus10023416.BGIv1.0 annot-version=v1.0 MSAPFSYESYNNSSSSVPVVSSSSSRVSRMVVFVLRILTLICLLISMVILTTNTATLQVFTNFSPTTGPTIVGIKIHFKDIYTYRYLLGATVVGMAYMLL QIVVTLCSLAKGRNGSLVFDFYGDKVVSYILATGSAAALGATRDMKPLFAGVGNVDKFFNRGYASASVLFLGFFCTAILSVMSSYALPKRH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	0	1
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	2.2	0.9647
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	2.4	0.9552
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	3.7	0.9618
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	4.9	0.9480
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	10.0	0.9273
					Lus10017305 [exp]	11.3	0.9548
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	11.8	0.9453
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	12.6	0.9488
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10036639 [exp]	15.3	0.9476
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038398 [exp]	15.9	0.9401

Compare expression of checked genes

Lus10023416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.