Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 124 / 7e-35 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 120 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G66260 110 / 7e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 108 / 3e-28 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT3G08000 51 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G10400 53 / 6e-08 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G23350 49 / 2e-06 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G53460 48 / 3e-06 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT2G37220 47 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 45 / 3e-05 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040299 [exp] 251 / 2e-83 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 129 / 2e-36 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10024413 [exp] 126 / 5e-35 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 125 / 1e-34 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 125 / 1e-34 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10004946 [exp] 125 / 1e-34 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10010982 [exp] 109 / 4e-28 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10000446 [exp] 107 / 3e-27 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10040851 [exp] 69 / 3e-13 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208000 [exp] 152 / 2e-45 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.016G093944 [exp] 134 / 3e-38 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 129 / 2e-36 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.017G129900 [exp] 117 / 1e-31 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 116 / 3e-31 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.008G052601 [exp] 93 / 2e-23 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G137200 [exp] 55 / 2e-08 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.010G227500 [exp] 53 / 3e-08 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.001G141300 [exp] 51 / 3e-07 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G025400 [exp] 49 / 2e-06 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10023417 pacid=23160598 polypeptide=Lus10023417 locus=Lus10023417.g ID=Lus10023417.BGIv1.0 annot-version=v1.0 ATGTCGAGCTCTCTTGACATGGCGCTCGACGAGCTTATCCAAAAGAACAACGTCGGCGGGCGTCGAGGTGGCTTAGTGAGCAAAGGCAGAGGCAGAGGAA GAGGGCAAGGCAGCAGCGGCCGCGGATTTGTTCATTCCATCAGCGGACCAGGTCCGGGCCGTCGGGTGTGGAGCCACCGCGGATCCTTCAGGTGTAGACC TTACGCAATGCCGCCGCCGCCGCAGCTGCAGGTACCGCAGATGGGCCAGGCGATGCCAGCGCTTGAGCCGATGATCGTCCCCGAATCTGATCGAGGAGAA GGCACGATGCTTTACTTGTCCAATTTGCATTATGGGGTTACTAATCAGGACATCAAGCTGCTCTTTTCAGATATAGGGGAGCTAAAACGGTATTCAATAA ACTATGACAAGAGTGGAAGGTCCAAGGGAACGGCCGAAGTAGTTTACACACGACGTAGAGATGCTTTGACGGCTATGAACAAGTACAACAATGTCGAACT TGACGGGAAGCCTCTCCAAATCGAGATGATAGGGGTTAAGATGGTAGCTGTTCCTCCTCCTCCGGTTTTTTTTCCTCCTTTTAACATGATGATAAGGCCT AATCACACCTTTGTGAGCGGTGAAGAGAGTTCCAGAGCAAGGCAAGACAGCCGCGGAGGCGGCAGAGGAGTTGGCCGAGACCAGACTCAAGGCCAACGAA CGAAGGTATCAGCAGAAGAGCTTGACGCGGAGTTGGACCTGTATCGCTTCGAAGCCATGAAATTGAAATGA
AA sequence Show only first row Show all	>Lus10023417 pacid=23160598 polypeptide=Lus10023417 locus=Lus10023417.g ID=Lus10023417.BGIv1.0 annot-version=v1.0 MSSSLDMALDELIQKNNVGGRRGGLVSKGRGRGRGQGSSGRGFVHSISGPGPGRRVWSHRGSFRCRPYAMPPPPQLQVPQMGQAMPALEPMIVPESDRGE GTMLYLSNLHYGVTNQDIKLLFSDIGELKRYSINYDKSGRSKGTAEVVYTRRRDALTAMNKYNNVELDGKPLQIEMIGVKMVAVPPPPVFFPPFNMMIRP NHTFVSGEESSRARQDSRGGGRGVGRDQTQGQRTKVSAEELDAELDLYRFEAMKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	1.0	0.9069
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10013230 [exp]	3.0	0.8993
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	5.7	0.8561
					Lus10024189 [exp]	5.8	0.9003
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	6.6	0.8186
AT2G40435			unknown protein		Lus10025257 [exp]	6.8	0.8322
AT3G52270			Transcription initiation facto...		Lus10023502 [exp]	6.9	0.8561
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	11.6	0.8179
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	16.5	0.7984
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	17.9	0.8818

Compare expression of checked genes

Lus10023417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.