Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 91 / 1e-20 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 90 / 4e-20 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 89 / 8e-20 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 87 / 3e-19 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 84 / 4e-18 HSP70B heat shock protein 70B (.1) AT1G56410 56 / 9e-09 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 48 / 4e-06 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 48 / 4e-06 BIP1 heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040300 [exp] 165 / 9e-51 AT5G02500 99 / 4e-24 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023418 [exp] 120 / 1e-30 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 99 / 3e-23 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 96 / 4e-22 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10009072 [exp] 86 / 1e-20 AT5G02500 194 / 1e-60 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10008962 [exp] 85 / 7e-20 ND / Lus10026100 [exp] 86 / 8e-20 AT1G16030 335 / 2e-112 heat shock protein 70B (.1) Lus10024407 [exp] 89 / 1e-19 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 89 / 1e-19 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206600 [exp] 94 / 1e-21 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 94 / 3e-21 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 92 / 1e-20 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 89 / 9e-20 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 89 / 1e-19 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 85 / 2e-18 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 79 / 2e-16 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 77 / 7e-16 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 69 / 5e-13 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 54 / 5e-08 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023419 pacid=23160471 polypeptide=Lus10023419 locus=Lus10023419.g ID=Lus10023419.BGIv1.0 annot-version=v1.0 ATGTTAATTTGTGCCACATTCGGTTCCAATTTGGTCGATGTGGCCTTTAGCAGCAATGGGTTTCAGTATCTCGGTTATGACGTCGTACATGTCAATTTCA CGGCAAAAAAGATCGATGATGTTTCCACTCCCAGTGAAATGTTCTTCGGCGAGGTTGTCTACGATCGGAAATGGAAAGTAATGATATCCAGTGATTGTGG CATCTTTGATCCCAATGAAACTGAAAGAATCGAATTTATTCCTGGCCCTGACTTGGCAACTGTAACTTCCAGTTACTATTTACATGGTTCCACATATAAT CACAAATCGCTCGATAACTGCAGATCCATCAAAGATATAGAAAGGTTGTACGTACTGTTCCTGTGTTCCAGAGCCTTTGCAGTACCGATCCTCCATCCTG CCGGACTCTTCCGGCTTGGTAAGTCTGAAAAAGAGCACAAGAAGAAAGTGGAGGCCAAGAATGCCCTGGAGAACTCCGCTTACAACATGAGGAACACTGT CAAGGATGAGAAGATCAGTGGCCAGCTAGATGCCGCTGACAAGAGTAACAACCAGCTAGCGGTGATGAAGGAGCTGGAAGGCATATGTAATCCAATCGTT GCTACGATGTACCAGGGCGGCGGCGGTCCTGGCATGCCTGCCGGTGGCATGGATGACAGCAATGTTCGTCCCTCGGGTGGCAGTGGAGGCCCCAAGATGG AAGTTTTCCCTGCGTTTTTCTTCGGTCTTCGAGAAGGATTGTTTTCATGTTACGATGGATGGTATCTTGTGCTTGATTTTACGATGGATCGTAAAATAAT TTCAAGTAAAATAATTGCAAAATATACAAACTAA
AA sequence Show only first row Show all	>Lus10023419 pacid=23160471 polypeptide=Lus10023419 locus=Lus10023419.g ID=Lus10023419.BGIv1.0 annot-version=v1.0 MLICATFGSNLVDVAFSSNGFQYLGYDVVHVNFTAKKIDDVSTPSEMFFGEVVYDRKWKVMISSDCGIFDPNETERIEFIPGPDLATVTSSYYLHGSTYN HKSLDNCRSIKDIERLYVLFLCSRAFAVPILHPAGLFRLGKSEKEHKKKVEAKNALENSAYNMRNTVKDEKISGQLDAADKSNNQLAVMKELEGICNPIV ATMYQGGGGPGMPAGGMDDSNVRPSGGSGGPKMEVFPAFFFGLREGLFSCYDGWYLVLDFTMDRKIISSKIIAKYTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023419 [exp]	0	1
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	2.0	0.8536
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	6.6	0.8663
AT1G32920			unknown protein		Lus10001526 [exp]	8.9	0.8226
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	9.2	0.7949
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10035663 [exp]	11.4	0.8072
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	12.6	0.8172
AT1G15170			MATE efflux family protein (.1...		Lus10018135 [exp]	13.0	0.8059
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029333 [exp]	13.1	0.8282
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	13.4	0.7811
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	14.2	0.7147

Compare expression of checked genes

Lus10023419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.