Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12570 712 / 0 FYD FYD (.1.2.3.4) AT2G37570 652 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2) AT5G02480 588 / 0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040301 [exp] 1005 / 0 AT3G12570 731 / 0.0 FYD (.1.2.3.4) Lus10024406 [exp] 613 / 0 AT2G37570 786 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2) Lus10025337 [exp] 612 / 0 AT2G37570 789 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206400 [exp] 783 / 0 AT3G12570 716 / 0.0 FYD (.1.2.3.4) Potri.008G054100 [exp] 780 / 0 AT3G12570 721 / 0.0 FYD (.1.2.3.4) Potri.013G024600 [exp] 45 / 4e-05 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023420 pacid=23160509 polypeptide=Lus10023420 locus=Lus10023420.g ID=Lus10023420.BGIv1.0 annot-version=v1.0 ATGGGGGAAGATCTCATAACGACCTTGTCAATGGAGAATTATCACCCTTCTACACTTTTGTCTATGGATTCAGGTTCTTTAATGCATGATGAGTTGGACC GAGAGTTGAATAGACCCTTGATTCTCTCCAGGCCACCTGACATCAATCTCCCCGTATCGTCCGAGCCTCCTTCGCCTTCTCTCCTGAACTGGAGCGACTC GTGTGACATCCTAGATTTGACCCATGCTCCTCCGACTTATGAGGTTGAGACGACTGTCCATTTGCCTAAAGCTTCCAAGAAGTGTGTCAAGAGGCTTGAC AGTATTTGGGGTGCTTGGTTCTTCTTTACCTTCTACTTCAAGCCGGTTTTGAACGAGAAGTCCAAGTCCAAGATAATTAAGGATAGTAACGGTGTTTCTG GATACGAGAAATCAGATCTTAACCTCGATTCATTCTTGGTACAGCATGATATGGAGAATATGTACATGTGGGTTTTCAAGGAAAGACCTGAGAATGCTTT GGGAAAGATGCAGCTGAGGAGTTACATGAACGGGCACTCCCGTCAGGGGGAGCGACCTTTTCCATTCAGTGTTGATAAAGGTTTCCTCAGATCTCACAGG ATGCAAAGGAAGCATTATAGGGGTCTCTCTAACCCTCAGTGCCTTCATGGTATCGAAGTTGTTCACACGCCGAACCTCATGAATCTCGAAGAGGAAGACC GGAAGAGGTGGGTAGAACTCACAGGACGCGAGATAAGCTTCTCAATCCCTTCTGAAGCTAGCGACTTTGGCTCGTGGAGGACCCTTCCCAACACGGAATT CGAGCTGGAGCGCCCCCCTCTTCCATTGAAGATCAACGGCCATTTCCACCCAAAGAAACTGCTGAACGGGACCGGTTTGAATCTTTCTACTCACTCTTCG GAACATAGTGGTGGTGAAGTAATGAACATTTCTCCAGTTTGCAATAATAAAAGGAAGAAGGATTATTCACCTCATGCAAATGAGGATGATTCGCGTGGTG AGAGGGGGGTTGATATGAACATCCAGCCGTTGGAACCGGCATGGCTCAACGATTTCACCGGGGTGATGAAAAACATCTACGGTCCCGTTACGGGAGCGAA AACAATATACGAAGACGAGGAAGCGTTCTTGATCATCATCAGCTTGCCCTTTGCAGATCTGGAGAGGGTGAAAGTCACTTGGAGGAACACTAACACACAT GGAATTGTGAAGATATCTTGTGTAAGTACTGCTCGCATGCCATTTATTAAACGGCACGATAGAACATTTAAGCTAACAGATCCAACACCAGAGCACTGTC CACCAGGGGAGTTCCTTAGGGAGATTGCCCTCCCGAACCGCATTCCAGAAGATGCTAAGCTCGAAGCCTACCGGGACGAGACAGGGACGATGCTGGAGAT CATTGTCCCGAAACGTCGCGTAGGACCGGAAGAACACGAAGTCCGTGTTTGTCTTCGCCCTTCTCCGTTGAGCGAGCGAGCATTCATCGACTTGAAGGAG ACATCACTTTGA
AA sequence Show only first row Show all	>Lus10023420 pacid=23160509 polypeptide=Lus10023420 locus=Lus10023420.g ID=Lus10023420.BGIv1.0 annot-version=v1.0 MGEDLITTLSMENYHPSTLLSMDSGSLMHDELDRELNRPLILSRPPDINLPVSSEPPSPSLLNWSDSCDILDLTHAPPTYEVETTVHLPKASKKCVKRLD SIWGAWFFFTFYFKPVLNEKSKSKIIKDSNGVSGYEKSDLNLDSFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFLRSHR MQRKHYRGLSNPQCLHGIEVVHTPNLMNLEEEDRKRWVELTGREISFSIPSEASDFGSWRTLPNTEFELERPPLPLKINGHFHPKKLLNGTGLNLSTHSS EHSGGEVMNISPVCNNKRKKDYSPHANEDDSRGERGVDMNIQPLEPAWLNDFTGVMKNIYGPVTGAKTIYEDEEAFLIIISLPFADLERVKVTWRNTNTH GIVKISCVSTARMPFIKRHDRTFKLTDPTPEHCPPGEFLREIALPNRIPEDAKLEAYRDETGTMLEIIVPKRRVGPEEHEVRVCLRPSPLSERAFIDLKE TSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	0	1
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	5.0	0.7297
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	7.1	0.7111
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	12.2	0.6877
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10006637 [exp]	16.0	0.6564
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	21.8	0.6145
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10037657 [exp]	21.9	0.6645
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	22.8	0.7031
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	23.2	0.6943
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10036481 [exp]	25.9	0.6890
AT5G20050			Protein kinase superfamily pro...		Lus10013660 [exp]	26.0	0.6262

Compare expression of checked genes

Lus10023420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.