Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39560 69 / 7e-14 Putative membrane lipoprotein (.1) AT5G59350 63 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040302 [exp] 417 / 4e-149 AT5G59350 117 / 3e-31 unknown protein Lus10016568 [exp] 102 / 2e-25 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 98 / 6e-24 AT5G59350 160 / 2e-47 unknown protein Lus10005456 [exp] 78 / 2e-17 AT5G59350 92 / 7e-23 unknown protein Lus10004955 [exp] 52 / 7e-08 AT5G59350 147 / 2e-44 unknown protein Lus10029407 [exp] 45 / 2e-05 AT3G52480 74 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054400 [exp] 226 / 6e-73 AT5G59350 91 / 8e-21 unknown protein Potri.010G206100 [exp] 225 / 8e-73 AT5G59350 111 / 1e-28 unknown protein Potri.001G238300 [exp] 157 / 3e-46 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 141 / 3e-40 AT5G59350 161 / 1e-47 unknown protein Potri.016G071700 [exp] 45 / 2e-05 AT3G52480 47 / 3e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023421 pacid=23160582 polypeptide=Lus10023421 locus=Lus10023421.g ID=Lus10023421.BGIv1.0 annot-version=v1.0 ATGAAATCTTTGAGTAGTGTAGGACTTGGGTTGACCATAGTATTTGGGTGCCTTTTGCTAGCTCTGGTAGCTGAGCTTTACTACCTGTTATGGTGGAAAA GAAGGTTCACTAACAGACGAAGAGATGATTTGAGCAGTAGTCCAGGGAAGGAGTTTTTGTACATGTTCTGCCTGAAAAAGCCATCATCATCATCATCAAT CAACCAGGAGCTGTGTTCATCAGTAAGAATCACAGATGCTCTTGTAAACCATGAGCAATGCAAGGAGTTTGTGGCTGATGCAATGGAAGCTGAGATCATT AGGCTGAATAGCCTCACAGGTCCACCAAGGTTTCTGTTCACAATTGTTGAGGAGACTAGAGAGGATTTGGAATCTGCGTCAAGATCAAGAGGGAGAAGCT TGAGTGATTTGATGCTGACTGTTGAGAGTAGTACTCCATACTTGACTCCTCTTACTTCTCCACCATTCTTCACACCTCCTCTCACTCCACCACCAATGGA TTCCAATAATTGGGAGACATCAACTGAGGCAGAGTTCAACAAGATAAGGTCATCCCCACCTCCAAAGTTCAAGTTTTTGCAGGATGCAGATGAGAAACTT TACAGGAGGAATCAAGAAATGAAAAGGGTTGGCAGGATTCAAGGAATGGACGGCCAGGAACAGGGTGAAGAAGTAAAAGATGGGAACTTTATCACCATCA CAGTTGATAAGTACATAGAGAGCAGCAGTTCATCAAAGGTACTTCCTTTGCCTTGTTCTTCTTCAACTTCATCAATGCAGCAAAGGCAATAA
AA sequence Show only first row Show all	>Lus10023421 pacid=23160582 polypeptide=Lus10023421 locus=Lus10023421.g ID=Lus10023421.BGIv1.0 annot-version=v1.0 MKSLSSVGLGLTIVFGCLLLALVAELYYLLWWKRRFTNRRRDDLSSSPGKEFLYMFCLKKPSSSSSINQELCSSVRITDALVNHEQCKEFVADAMEAEII RLNSLTGPPRFLFTIVEETREDLESASRSRGRSLSDLMLTVESSTPYLTPLTSPPFFTPPLTPPPMDSNNWETSTEAEFNKIRSSPPPKFKFLQDADEKL YRRNQEMKRVGRIQGMDGQEQGEEVKDGNFITITVDKYIESSSSSKVLPLPCSSSTSSMQQRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10023421 [exp]	0	1
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	2.0	0.8305
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	3.7	0.8247
AT5G58520			Protein kinase superfamily pro...		Lus10031864 [exp]	7.1	0.8196
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	11.5	0.8018
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	14.0	0.8093
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	17.0	0.7830
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	17.6	0.7889
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	21.0	0.7904
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	25.1	0.8026
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	31.3	0.7843

Compare expression of checked genes

Lus10023421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.