Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 175 / 1e-52 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G12210 53 / 6e-08 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT3G12070 49 / 8e-07 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT5G40280 45 / 3e-05 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040303 [exp] 273 / 5e-90 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10039714 [exp] 60 / 3e-10 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10018502 [exp] 59 / 5e-10 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10000944 [exp] 46 / 3e-06 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10032149 [exp] 47 / 7e-06 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 45 / 4e-05 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017310 [exp] 40 / 0.0009 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10019318 [exp] 40 / 0.001 AT2G39550 49 / 7e-07 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054500 [exp] 193 / 1e-59 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 148 / 1e-43 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 58 / 1e-09 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.017G073200 [exp] 48 / 2e-06 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10023422 pacid=23160609 polypeptide=Lus10023422 locus=Lus10023422.g ID=Lus10023422.BGIv1.0 annot-version=v1.0 ATGGCGGACGAACCGCAGCTGGACTTAGAGCCTTCCTCATCCTCAGAAGAAGAAGAAGAAGGAGGAAGTGTGTCTATTGGGAAATCAGTATCTGCTTTCG ACAGGGAGCGGCATGTGACGTTCTTGCGGATGATGTACCAGATGATACCGTATCATTATCAATCGCATGAGATCAATCGCATTACCCTTGCCTACTTCGC CATCTCCGGCCTCGACATCGTTGGGGCCCTTGATACAGTTGACAGGGATGAAGTTGCTTGCTGGGTTTTATCACTCAGAGCTCAACCTCGGGATGTTGCT GGAATTGACAATGGAGAATTCTATGGTTTTAGTGGCTCCCGTTCTTCTCAGTTTCCTTCCGAAAATTCCGGGGGTTTCAGTGTCAATCACAGTCATTTGG CAAGCACATACTGCGCTTTAGCCATATTGAAGATTATTCGCCACAATTTATTCGATATTGATTGGAGACCATTATTAATGTCAATGAGAAATTTGCAACA ACCAGATGGCAGGCAAGCATTTGATGGTGGATTTCAAGGAAGATTAAATAAGCCGAGTGACACTTGCTATGCATTCTGGGTCGGTGCAGTGTTGAAGATG TTGGGAGGCCAAAAGCTAATCAATTGCGGTGGGTTCTCCAAATTCCAAGATGAGCTGCCCGATCTCTACCATTCCTACTACGGATTCACTGCCTTCAGCC TCTTGGAAGAACCTGGCCTCAACTCAATGTTCGTCGAGCTCGGAATAACTAATGCCACTGCTTTAAGAAACTGA
AA sequence Show only first row Show all	>Lus10023422 pacid=23160609 polypeptide=Lus10023422 locus=Lus10023422.g ID=Lus10023422.BGIv1.0 annot-version=v1.0 MADEPQLDLEPSSSSEEEEEGGSVSIGKSVSAFDRERHVTFLRMMYQMIPYHYQSHEINRITLAYFAISGLDIVGALDTVDRDEVACWVLSLRAQPRDVA GIDNGEFYGFSGSRSSQFPSENSGGFSVNHSHLASTYCALAILKIIRHNLFDIDWRPLLMSMRNLQQPDGRQAFDGGFQGRLNKPSDTCYAFWVGAVLKM LGGQKLINCGGFSKFQDELPDLYHSYYGFTAFSLLEEPGLNSMFVELGITNATALRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10023422 [exp]	0	1
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	5.4	0.8410
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	11.0	0.8374
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	11.8	0.8098
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	14.0	0.7817
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	15.5	0.8249
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	20.4	0.8154
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	24.3	0.8022
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	28.2	0.8062
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	29.9	0.7560
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	30.9	0.7853

Compare expression of checked genes

Lus10023422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.