Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 850 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 850 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 838 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 838 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 786 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 778 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G28540 574 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 572 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 537 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G09590 380 / 8e-124 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023418 [exp] 978 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 975 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 971 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 851 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 850 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 850 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 848 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 796 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10025354 [exp] 696 / 0 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054000 [exp] 862 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 861 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 860 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 859 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 857 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 853 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 796 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 768 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 723 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 657 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10023423 pacid=23160539 polypeptide=Lus10023423 locus=Lus10023423.g ID=Lus10023423.BGIv1.0 annot-version=v1.0 ATGCCGGGAAAAGGAGAAGGTCCGGCGATCGGAATCGATCTCGGCACGACGTACTCTTGCGTCGGAGTCTGGCAGCATGACCGGGTAGAAATCATAGCCA ACGATCAAGGGAACCGGACCACGCCGTCGTATGTGGCGTTCACCGATTCCGAGAGGTTGATCGGCGATGCCGCCAAGAACCAGGTCGCTATGAACCCTAC CAACACCGTTTTCGGCAATGCAGTGAACAACGCAGTAGTAACCGTCCCAGCTTACTTCAACGACTCCCAACGTCAAGCAACCAAAGACGCCGGCACCATA GCCGGCCTCAACGTCATGCGTATCATCAATGAGCCAACCGCTGCTGCAATTGCCTACGGCTTAGACAAGAAGGCCACTAGCGTAGGCGAAAAAAACGTAC TGATCTTCGATCTCGGCGGTGGAACGTTCGATGTTTCGCTTCTAACAATCGAAGAAGGTATTTTCGAAGTGAAGGCCACCGCTGGAGACACCCACCTCGG CGGTGAGGACTTCGACAACAGAATGGTGAATCATTTCGTACAGGAATTCAAAAGGAAGAACAAGAAGGATATCAGCGGGAATCCTAGAGCTCTTAGGAGG TTGAGAACCGCTTGCGAGAGGGCCAAAAGGACTCTCTCCTCAACAGCTCAAACCACCATCGAGATCGATTCTCTTTTCGAAGGCATTGATTTCTATTCAA CAATCACTCGCGCCAGGTTCGAGGAGATGAACATGGATCTGTTTAGAAAGTGTATGGAGCCGGTGGAAAAATGCTTGAGGGATGCTAAGATGGACAAGAT CACTGTCCATGATGTTGTCCTTGTTGGTGGATCAACCAGGATTCCGAAGGTGCAGCAGCTTTTGCAGGACTTCTTTAATGGAAAGGAGCTCTGCAAGAGC ATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCAGTTCAAGCTGCAATCTTGAGCGGTGAAGGAAACGAGAAGGTTCAGGATCTTCTCTTGTTGGATG TTACTCCTCTGTCTCTTGGTTTGGAAACTGCAGGTGGTGTGATGACAGTGTTGATCCAGCGAAATACGACGATTCCTACTAAGAAGGAGCAAGTTTTCTC CACCTACTCGGATAACCAACCGGGTGTGCTGATTCAGGTTTACGAAGGCGAAAGAACAAGAACCAGGGATAATAACTTGTTGGGCAAGTTTGAGCTCTCT GGCATTCCTCCAGCAGCCAGAGGAGTACCGCAAATCACAGTCTGCTTCGACATCGACGCCAACGGAATCCTGAATGTATCAGCGGAGGACAAGACGACGG GACAGAAGAACAAGATCACGATCACGAACGATAAAGGAAGGCTCTCGAAAGATGAGATAGAGAAAATGGTGACGGAAGCGGAGAAGTACAAGGCGGAGGA CGAGGATCACAAGAAGAAAGTGGAGGCGAAGAATGCGCTGGAGAATTATGCTTACAACATGAGGAATACTGTTAGGGACGAGAAGATCAGCTCCAAGCTG GCTGATGCGGACAAGAAGAAGATTGAGGATTCTATTGATCAGGCGATTCAGTGGCTGGATAACAACCAGCTGGCTGACGCGGATGAGTTTGAGGAAAAGA TGAAGGAGCTTGAAGGAGTTTGTAATCCGATCATTGCTAAGATGTACCAGGGTGGAGGTGCCGGAGACATGGGCGGTGGCGGAAGGGATGATGTCAGCGG CTCGGCTCCTGCTGGTGGTGGCAGCGGTGCCGGTCCCAAGATTGAGGAAGTTGATTAA
AA sequence Show only first row Show all	>Lus10023423 pacid=23160539 polypeptide=Lus10023423 locus=Lus10023423.g ID=Lus10023423.BGIv1.0 annot-version=v1.0 MPGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFGNAVNNAVVTVPAYFNDSQRQATKDAGTI AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRR LRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKITVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKS INPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELS GIPPAARGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVTEAEKYKAEDEDHKKKVEAKNALENYAYNMRNTVRDEKISSKL ADADKKKIEDSIDQAIQWLDNNQLADADEFEEKMKELEGVCNPIIAKMYQGGGAGDMGGGGRDDVSGSAPAGGGSGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	0	1
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	1.4	0.9366
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	3.0	0.9123
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Lus10006140 [exp]	3.5	0.9205
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	3.7	0.8790
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	6.9	0.8831
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	7.7	0.9083
AT4G29110			unknown protein		Lus10014153 [exp]	8.1	0.8842
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	8.5	0.8936
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004396 [exp]	9.6	0.8539
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	10.0	0.9052

Compare expression of checked genes

Lus10023423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.