Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55660 61 / 3e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT5G56820 60 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56440 59 / 9e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G02910 58 / 2e-09 F-box/RNI-like superfamily protein (.1.2) AT1G78760 58 / 2e-09 F-box/RNI-like superfamily protein (.1) AT1G60400 57 / 4e-09 F-box/RNI-like superfamily protein (.1) AT1G16930 57 / 5e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 56 / 7e-09 F-box/RNI-like superfamily protein (.1) AT5G02700 56 / 1e-08 F-box/RNI-like superfamily protein (.1) AT3G59190 54 / 4e-08 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020748 [exp] 233 / 3e-75 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10022888 [exp] 164 / 1e-48 ND 38 / 0.010 Lus10029586 [exp] 143 / 8e-40 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10006318 [exp] 134 / 2e-35 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 131 / 1e-34 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 119 / 3e-31 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 117 / 1e-30 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10032432 [exp] 117 / 6e-30 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029357 [exp] 102 / 8e-25 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002001 [exp] 74 / 4e-15 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G337200 [exp] 72 / 3e-14 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 71 / 1e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G024200 [exp] 65 / 1e-11 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G011200 [exp] 58 / 2e-09 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G322900 [exp] 57 / 6e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.014G039700 [exp] 56 / 1e-08 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 56 / 2e-08 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 54 / 3e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 54 / 4e-08 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023425 pacid=23160645 polypeptide=Lus10023425 locus=Lus10023425.g ID=Lus10023425.BGIv1.0 annot-version=v1.0 ATGCCTTTAATTCTCTCTGGATATGAAGAACAACAGCTGGCGGCAGGCAGAGAAAGCTTTGAGAAAGCAATCGGAAACGAGGATGATTCTTCAATGGACA GGTTAAGCAATCTCCCGGAGTCAGTGATTCATCACATCCTTTCGTTCCTCGACACCAGATCAGCTGTTCAGACCTCAATACTATCCCGACAATGGAGATA CGCCTGGAAACATCTCCCCGTCCTCAATTTGCGTCACGCTCACGGTTCCAATATGTTCGTCAAGTCGCCCCCGAGATTCAAACGTCTGAAAACTTTAGAA CTAAGCACTTTTAGCTTCAGGATTGGATTTCCATGGTCTTGTTTCCCTGTGCTAGGAAAATTAGACTTGTCACTCTGCACCTTCTTTGCTGGTCCGGAAG AGGTTACCATCGACCCTTTTTCTAGCCTCCCATGTGTCAAAGATTTGGGGTTGACTACTGTGTTTGGTAGTCATGGTGATACAAGACTCAGGATTTCTGG CCTGGAGCTGCATAGTCTCCGTATCTCATACATTTCATTTCAGAAGGTGGAAATATATGCAACGAAACTAGAATACTTCGCCCTCGAGTGTTCTTGCACT CGCATCGTGGAATTCACCGAGTTGACCCTTCCTTGCCTTGATCATGCGGATATTCAGCTTGACTATTATCTGCCTTTTAAGACGCGGCTGCTTGGAGATA TCTCCAACTATCTTGAAGATCAACCCTATCCTTTTACCAGGTTGAAGTCTGTGATCATCAATGGCTCTCGGAACTTTGTACCTTTCGCAGTGCTTAACTA CTTCCTTAAAGGGTCTTCTGATATGAAACCAGTACTTCTTAAGTTTGGATCATAG
AA sequence Show only first row Show all	>Lus10023425 pacid=23160645 polypeptide=Lus10023425 locus=Lus10023425.g ID=Lus10023425.BGIv1.0 annot-version=v1.0 MPLILSGYEEQQLAAGRESFEKAIGNEDDSSMDRLSNLPESVIHHILSFLDTRSAVQTSILSRQWRYAWKHLPVLNLRHAHGSNMFVKSPPRFKRLKTLE LSTFSFRIGFPWSCFPVLGKLDLSLCTFFAGPEEVTIDPFSSLPCVKDLGLTTVFGSHGDTRLRISGLELHSLRISYISFQKVEIYATKLEYFALECSCT RIVEFTELTLPCLDHADIQLDYYLPFKTRLLGDISNYLEDQPYPFTRLKSVIINGSRNFVPFAVLNYFLKGSSDMKPVLLKFGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	0	1
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	3.0	0.8158
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	3.5	0.8375
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	5.9	0.8047
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	6.0	0.8202
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	7.7	0.7865
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	11.5	0.7894
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	12.7	0.7791
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	12.7	0.7433
AT3G07190			B-cell receptor-associated pro...		Lus10025914 [exp]	13.5	0.7881
AT2G01818			PLATZ transcription factor fam...		Lus10030763 [exp]	15.4	0.7938

Compare expression of checked genes

Lus10023425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.