Plant FIBer expression Database

Lus10023426 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13680 565 / 0 AtELP1, ELO2, ABO1 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040306
[exp]
905 / 0 AT5G13680 880 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G208400
[exp]
728 / 0 AT5G13680 1564 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Potri.008G052400
[exp]
711 / 0 AT5G13680 1547 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF04762 IKI3 IKI3 family
Representative CDS sequence
>Lus10023426 pacid=23160585 polypeptide=Lus10023426 locus=Lus10023426.g ID=Lus10023426.BGIv1.0 annot-version=v1.0
ATGAATAATCTCAAGCTTTACTCCGAGATAACTCTCAACATCGAGTTGCAGTCCGAAGATGAGAAGCTGCTATTCTCTGCGTTTGATATTGAACGCAACC
GTTTGTTCTTTGCTTCCTCTGCCAACTTCGTGTACAACACTCAGCTCTCGTCTTTCCAGGACGGAAGATCGTGGAAGGAGATCTTATTGTCTGCAGAAGT
TCATCTACTTGATTTGGAGGATGGGGATGTTATTACTTCCTTTGATTACCTCATGGAGAAAGAAGCGTTGGTTCTGGGGACTTCCAATGGACTTCTGTTG
CTGCATATGGTGGATGATAATGCTACCGAAGTTGTTGGTCAGGTGGAGGGTGGTGTCAAGTGCGTCTCCCCAAGTCCAGATGGAGACTTGCTCTGTGTTG
TCACTGGTTCCGGGCAGTTGCTGGTGATGACGCATGATTGGGATGTGTTGTATGAAACTTCTATCGAGGATCATCCACCTGATGGTGTTGACGTAAGTAG
ACCAGCTTTCTCTTCCTCCATTATTTCTAAGAGTTCTGTAGCTTGGAGAGGTGATGGGAAGTACTTTGCAACCTTAAGTGAGGTGAATCGCACTTCTTCG
TCATCATTAGACAAGAAGCTTAAGGTTTGGGAACGGGACTCAGGTTCATTGCATGCCATGTCAGATGCTAAGTTTTTCATGGGAGCAGTTATGGAATGGA
TGCCCAGTGGAGCAAAAATTGCAGCAGTATATGACAGAAAGATGGAGGATGAGTGTCCTGCAATAGTTTTCTACGAGAGGAATGGGTTGTACAGAAGCTC
TTACAGTATCAATGGACCTAAGGATGTGACAGTAGAAGTTCTCAAGTGGAACTGCTCTTCTGACCTTCTTGCTTCTGTTGTTAGATATGATAATCATGAT
GCTGTTAAGATTTGGCACTTTAGTAACAACCACTGGTACTTAAAACATGAAGTTCGATTCCCAAGGCAAGATGGTGTTAGCTTAATGTGGGATCCTATAA
AACCACTGCAGTTGATCTGTTGGACTCTTGGAGGCCAGGTTACAGTTTGCAATTTCACCTGGGTTACCTCCATTACGGAAAGCTCGACAGCTCTGGTAAT
TGACGATTCAAAGATACTTGTGACTCCTCTTTCTTTATCCCTGATGCCACCTCCACTCTATTTGTTTCACCTGAAATTTCCAAGTGCCGTGCGAGATGTT
GCTTTGCACTGCAGGGGCACTAAGAACCGTGTTGCTGCCTTTCTGTCAGATGGCAGTTTGTGTGTTGCAGAGCTTCCAGAATCAGATTCCTGGGAGGAAC
TTGAGGGCAAAGAGCTTTGCATTGAATCTTCTATCCCTGATATTGCATTTGGATCTCTTTCTCATCTTACATCGTTGGATTCACATTCACTTCTTGTTGT
TTCTCACTACGGTTCCAGTCATAACGTGTGTTTTTCCCATGGTACACCATGCAAGGAAAAATTGAGGGGTTTCTATCTGCAGGAGATTGAATTGATGTGT
TCTGAAGATCATGTGCCAGGTTTGCTCACAAACTCAGGCTGGCATGGAAAGATTTTACATGAAAACTCTTTGGAAGGACTGGTAATTGCAATTGCCTCTA
ATCCTGCCAATGTCTCTTCAGCGTTTGTTCAGTTTGATGGCGGGAAAGTCTTAAACTATCACTCAAAGTCAGGCCTGGCTGTTACAGAATGGATTGCAAA
ACGTGATGGCATTAGTTTTGGTTCATCTTGTCCTATAATGGGTGCTGCCCTTGTCGGTGAGGGTGGGTCTACACGGAGAAATAGAATCAAAATATCAGAA
CTTCCACTTGGGCGGCAGAAAAAAAAGAGAAGAAGAAAATGCCAACTTCATTAA
AA sequence
>Lus10023426 pacid=23160585 polypeptide=Lus10023426 locus=Lus10023426.g ID=Lus10023426.BGIv1.0 annot-version=v1.0
MNNLKLYSEITLNIELQSEDEKLLFSAFDIERNRLFFASSANFVYNTQLSSFQDGRSWKEILLSAEVHLLDLEDGDVITSFDYLMEKEALVLGTSNGLLL
LHMVDDNATEVVGQVEGGVKCVSPSPDGDLLCVVTGSGQLLVMTHDWDVLYETSIEDHPPDGVDVSRPAFSSSIISKSSVAWRGDGKYFATLSEVNRTSS
SSLDKKLKVWERDSGSLHAMSDAKFFMGAVMEWMPSGAKIAAVYDRKMEDECPAIVFYERNGLYRSSYSINGPKDVTVEVLKWNCSSDLLASVVRYDNHD
AVKIWHFSNNHWYLKHEVRFPRQDGVSLMWDPIKPLQLICWTLGGQVTVCNFTWVTSITESSTALVIDDSKILVTPLSLSLMPPPLYLFHLKFPSAVRDV
ALHCRGTKNRVAAFLSDGSLCVAELPESDSWEELEGKELCIESSIPDIAFGSLSHLTSLDSHSLLVVSHYGSSHNVCFSHGTPCKEKLRGFYLQEIELMC
SEDHVPGLLTNSGWHGKILHENSLEGLVIAIASNPANVSSAFVQFDGGKVLNYHSKSGLAVTEWIAKRDGISFGSSCPIMGAALVGEGGSTRRNRIKISE
LPLGRQKKKRRRKCQLH

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13680 AtELP1, ELO2, A... ELONGATA 2, ABA-OVERLY SENSITI... Lus10023426
[exp]
0 1
AT1G14850 NUP155 nucleoporin 155 (.1) Lus10001585
[exp]
1.4 0.9691
AT4G10320 tRNA synthetase class I (I, L,... Lus10041706
[exp]
3.2 0.9387
AT1G14850 NUP155 nucleoporin 155 (.1) Lus10003700
[exp]
3.2 0.9662
AT3G14120 unknown protein Lus10037684
[exp]
3.7 0.9529
AT2G06990 HEN2 hua enhancer 2, RNA helicase, ... Lus10022944
[exp]
4.0 0.9564
AT5G13680 AtELP1, ELO2, A... ELONGATA 2, ABA-OVERLY SENSITI... Lus10040306
[exp]
4.8 0.9260
AT2G38770 EMB2765 EMBRYO DEFECTIVE 2765, P-loop ... Lus10019778
[exp]
5.0 0.9534
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Lus10043477
[exp]
5.2 0.9573
AT5G51200 EMB3142 EMBRYO DEFECTIVE 3142, Protein... Lus10030088
[exp]
6.0 0.9533
AT2G16880 Pentatricopeptide repeat (PPR)... Lus10036506
[exp]
6.3 0.9496

Lus10023426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.