Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13680 699 / 0 AtELP1, ELO2, ABO1 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040306 [exp] 1046 / 0 AT5G13680 880 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208400 [exp] 815 / 0 AT5G13680 1564 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Potri.008G052400 [exp] 804 / 0 AT5G13680 1547 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF04762 [flax] [poplar] IKI3 IKI3 family
Representative CDS sequence Show only first row Show all	>Lus10023427 pacid=23160477 polypeptide=Lus10023427 locus=Lus10023427.g ID=Lus10023427.BGIv1.0 annot-version=v1.0 ATGGTCAGGAGACATAGAATTGATTTTAATGTCCTTGTAGACTACTGTGGTTGGCAAGCATTTGTTGAATCTGCATCAGAATTTGTGCGCCAAATTGATA ACTTGAGCTATGTCACCGAGTTTGTATGTGCAGTTAAAAGTGGAAATATCATGGACACCTTGTACAAAAATTATGTTTCTCTGTCTGGTCCAAAAGAAAC TGATGATGTTCAAGCCAAAGTTTCGGAGGTTTATGATAACAAGGTTTCTTCTATCCTGCTTTCTGTAAGGAAGGCTCTGGAGGAACAGGTCACTGAAAGT CCGGGAAGGGAACTTTGCATATTGACCACTCTAGCTCGTAGTGAGCCACCAGCCCTTGAAGTGGCTCTAGAGAGAATAAAAGTTATTCGTGAAATGGAAT TGTTAGGTTCAGATGATCCTAGGAAGGCAACTTATCCTTCTGCTGAAGAAGCTGTGAAACATCTGTTATGGTTATCTGATTCGCATGCTGTATTTGAAGC AGCTTTAGGTCTTTATGACTTAAACCTGGCAGCTATTGTGGCATTGAATTCTCAGAGAGACCCAAAGGAATTTCTTCCTTATCTAGAGGAGCTAGAAAGG ATGCCAAGTCTTATCATGCAGTACAATATTGACCTTAGATTGAATAGGCTTGATAATGCACTCAAGCATCTTGTCATGGCTGGTGATGCTTATTACATAG ATTGCCTGAATCTCTTGAAGAAAAACCCGAAGTTGTTTCCTCTGGGTCTTCAGTTGATCGCTGATCCTACCAAAAGGATGCAGGTTCTTGAGGCCTGGGC TGACCATCTAAGTGACGAGAAGTCCTTTGAGGATGCTGCAACAACCTATCTCTGCTGTTCCAAATTGGAAAAGGCTTTAAAGGCATATCGTGATTGTGGT AACTGGACAGGGGTCCTCACAGTAGCAGGTCTCCTTAAAATGGAAAAGGACGAGACAATGCAACTCGCTCATGATCTTTGTGAGGAGCTTCAAGCAATGG GCAAACCAGCAGAAGCTGCCAAGATTGCCTTAGATTATTGTGGAGATGTTCAGAATGGGATAAGCTTATTGATCACTGCTAGAGAGTGGGAGGAGGCCTT GAGAATTTCTTTTATGCACATGCAAGACAAGTTAGTCTCTGAAGTAAAGAATGCATCTCTGGAATGTGCTGCTACCCTGAGTGGCGAATATGAGGAAGGC ATTGAGAAAGTGGGGAAATACTTGACTCGCTACTTAGCTGTTAGACAAAGGCGGCTGCTTCTTGCGGCAAAGCTTAGGTCGGAGGAGCCCTCGGTGAATG ATCTGGATGATGATACAGCATCAGAAGCTAGTAGCAACTTCAGTGGAATGAGTGCGTACACCACCGGGACGACAAAAGGCTCCACTGTTTCGGCGAGCTC AAGAGCTACTAGCAGAGCAAAAAGAGATGCAAGGCGGCAAAAGAGCAAAGGAAAAATTCGGCCAGGAAGCCCTGGAGAGGAGATGGCCCTGGTAGAGCAT TTGAAGGGTATGTCTCTGGCAGCCGGAGCTATACGGGAGCTCAAATCATTGCTTTCTTGCCTTATAATGCTCGGTAGTGAGCAAGTTGCAAAGAAGCTAC AACGAGTTGCAGAGACCTTTCAGCTGTATCAGATGGGAGCAGTGAGATTGGCAGAAGATACATTGGATTCTGACTCCATAAATGAACAGGCACACTCGTT AGAGCGTTACGTAGAAAAAGGAAGTGCCGATCCACAAACTTCACTTGCGATGTCATGGCGCTCTAAAGTTTTCATCTCTCCCTAA
AA sequence Show only first row Show all	>Lus10023427 pacid=23160477 polypeptide=Lus10023427 locus=Lus10023427.g ID=Lus10023427.BGIv1.0 annot-version=v1.0 MVRRHRIDFNVLVDYCGWQAFVESASEFVRQIDNLSYVTEFVCAVKSGNIMDTLYKNYVSLSGPKETDDVQAKVSEVYDNKVSSILLSVRKALEEQVTES PGRELCILTTLARSEPPALEVALERIKVIREMELLGSDDPRKATYPSAEEAVKHLLWLSDSHAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLEELER MPSLIMQYNIDLRLNRLDNALKHLVMAGDAYYIDCLNLLKKNPKLFPLGLQLIADPTKRMQVLEAWADHLSDEKSFEDAATTYLCCSKLEKALKAYRDCG NWTGVLTVAGLLKMEKDETMQLAHDLCEELQAMGKPAEAAKIALDYCGDVQNGISLLITAREWEEALRISFMHMQDKLVSEVKNASLECAATLSGEYEEG IEKVGKYLTRYLAVRQRRLLLAAKLRSEEPSVNDLDDDTASEASSNFSGMSAYTTGTTKGSTVSASSRATSRAKRDARRQKSKGKIRPGSPGEEMALVEH LKGMSLAAGAIRELKSLLSCLIMLGSEQVAKKLQRVAETFQLYQMGAVRLAEDTLDSDSINEQAHSLERYVEKGSADPQTSLAMSWRSKVFISP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023427 [exp]	0	1
AT3G49990			unknown protein		Lus10010625 [exp]	6.0	0.8913
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	7.1	0.9146
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	8.7	0.8879
AT1G30240			unknown protein		Lus10014364 [exp]	10.7	0.9015
AT4G15640			unknown protein		Lus10033970 [exp]	10.7	0.9034
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	12.4	0.9117
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	13.5	0.9071
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	13.8	0.8925
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	18.1	0.8976
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	18.5	0.8424

Compare expression of checked genes

Lus10023427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.