Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59890 244 / 4e-81 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT3G46010 238 / 9e-79 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT3G46000 238 / 1e-78 ADF2 actin depolymerizing factor 2 (.1) AT5G59880 235 / 9e-78 ADF3 actin depolymerizing factor 3 (.1.2) AT4G00680 222 / 1e-72 ADF8 actin depolymerizing factor 8 (.1) AT1G01750 218 / 5e-71 ADF11 actin depolymerizing factor 11 (.1) AT4G25590 218 / 5e-71 ADF7 actin depolymerizing factor 7 (.1) AT5G52360 213 / 6e-69 ADF10 actin depolymerizing factor 10 (.1) AT2G31200 178 / 2e-55 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT4G34970 176 / 2e-54 ADF9 actin depolymerizing factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040307 [exp] 413 / 4e-145 AT5G59890 243 / 2e-81 actin depolymerizing factor 4 (.1.2) Lus10024418 [exp] 249 / 3e-83 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10024417 [exp] 249 / 4e-83 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 249 / 4e-83 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10027474 [exp] 216 / 3e-70 AT5G52360 244 / 6e-85 actin depolymerizing factor 10 (.1) Lus10038859 [exp] 212 / 1e-68 AT4G25590 232 / 2e-80 actin depolymerizing factor 7 (.1) Lus10014977 [exp] 211 / 2e-68 AT4G25590 233 / 1e-80 actin depolymerizing factor 7 (.1) Lus10039229 [exp] 205 / 6e-66 AT5G52360 231 / 6e-80 actin depolymerizing factor 10 (.1) Lus10008489 [exp] 186 / 4e-58 AT1G01750 192 / 2e-64 actin depolymerizing factor 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236700 [exp] 263 / 6e-89 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.009G028100 [exp] 262 / 3e-88 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.010G208500 [exp] 261 / 4e-88 AT5G59890 255 / 4e-89 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 261 / 6e-88 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.009G028200 [exp] 257 / 2e-86 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 252 / 2e-84 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.015G144500 [exp] 224 / 2e-73 AT4G25590 257 / 6e-90 actin depolymerizing factor 7 (.1) Potri.012G141600 [exp] 223 / 6e-73 AT4G25590 254 / 5e-89 actin depolymerizing factor 7 (.1) Potri.001G106200 [exp] 222 / 1e-72 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1) Potri.003G125500 [exp] 220 / 7e-72 AT4G00680 234 / 1e-80 actin depolymerizing factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10023428 pacid=23160565 polypeptide=Lus10023428 locus=Lus10023428.g ID=Lus10023428.BGIv1.0 annot-version=v1.0 ATGGGTTTTTTGAGATTTGTAGGGAACAACAGTACTAGTACAACTACTACCACTGATCAGGTTATGAGGATGATGCCGTGTTCGGAAAACACAATGCCAA TCGACAGCATGAGGAACCTTGATGCTGCAGATGCCAGCTTCTGCTGGGATTCCATGGCTTTCAGCGATTACAATTACCAACTAGATCCTCCTCTTCATCA TCAACCATCATTCTTTTCCAGCTATGATCATCAGCAGTTTTCAGCTGCGGGGTCTGAATATGTGCCCTTCTCTAGCGGCTACGACACCGTTTCAAGCCAG TCTTCACCTGTTCTTCCTCTGGTGGCCAATCCTCATGTGAATCTGGGTCTGAATAGCAGGCAACAAGTGATGAGGAAGCGGCCTAGTGAAGTTAGCAGCA TGGCAATGAAGGGTACTGGGAAGAGGAAGAAATCCAGTCCCAATGCCATTTCTGCTGATGTAGGGGCATTGCATCAGTATGAACAAATGAACCGTCCGTC AATCACCCTCCAAGAAATCAAGGGTGCGCAGATGCCAGTGAGGAGAAGCCAAAAGATGAGTGACAAAATCACAGCCCTCCAAAAATTGGTATCTCCGTAC GGCAAGACAGATACTGCCTCTGTGCTGGAAGAGGCTTCTCTCTGCATCAAGCTCCTCCACAACCATATTCAGGCAAACGCTGCATCTGGGATGGCTGTTC ATGATGACTGCAAGCTTAAGTTCTTGGAACTGAAAGCGAAGAGGACTTACCGCTACATTGTATACAAGATCGAGGAGCAGCAGAAGCAAGTGATCGTGGA GAAGCTCGGTGAACCAACTGATTCCTACGAAGACTTTTCTGCAAGTCTTCCTGCTGATGAGTGCCGATATGCTGTCTATGATTTCGACTATGTGACTGAG GATAACCGCCAGATAAGCAGGATCATCTTCGTTGCTTGGTCTCCTGATACGGCGAGGGTGAGAAGCAAGATGATTTACGCGAGCTCCAAGGACAGGTTTA AGAGGGAGTTGGATGGCATCCAGATCGAGTTGCAAGCCACTGATCCTACCGAGATGGGTCTCGATGTCATCAAAAGTCGCACGACTTGA
AA sequence Show only first row Show all	>Lus10023428 pacid=23160565 polypeptide=Lus10023428 locus=Lus10023428.g ID=Lus10023428.BGIv1.0 annot-version=v1.0 MGFLRFVGNNSTSTTTTTDQVMRMMPCSENTMPIDSMRNLDAADASFCWDSMAFSDYNYQLDPPLHHQPSFFSSYDHQQFSAAGSEYVPFSSGYDTVSSQ SSPVLPLVANPHVNLGLNSRQQVMRKRPSEVSSMAMKGTGKRKKSSPNAISADVGALHQYEQMNRPSITLQEIKGAQMPVRRSQKMSDKITALQKLVSPY GKTDTASVLEEASLCIKLLHNHIQANAASGMAVHDDCKLKFLELKAKRTYRYIVYKIEEQQKQVIVEKLGEPTDSYEDFSASLPADECRYAVYDFDYVTE DNRQISRIIFVAWSPDTARVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVIKSRTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	0	1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	1.0	0.9536
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10003023 [exp]	1.7	0.8842
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	2.0	0.8850
AT1G50740			Transmembrane proteins 14C (.1...		Lus10019624 [exp]	3.7	0.8637
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	4.2	0.8569
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	4.2	0.8658
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	5.5	0.8781
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	5.8	0.8417
AT1G56423			unknown protein		Lus10029844 [exp]	6.0	0.8840
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	8.0	0.8578

Compare expression of checked genes

Lus10023428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.