Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 386 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 360 / 4e-123 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 315 / 2e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 303 / 1e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 296 / 3e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 296 / 9e-98 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 296 / 1e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 294 / 3e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 274 / 7e-90 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G40900 272 / 2e-88 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040310 [exp] 681 / 0 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 451 / 5e-159 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 439 / 4e-154 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 431 / 4e-151 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 421 / 4e-147 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 402 / 2e-139 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 400 / 8e-139 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 343 / 5e-116 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 342 / 6e-116 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 424 / 2e-148 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 412 / 1e-143 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 332 / 9e-113 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 328 / 2e-110 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 313 / 1e-104 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 311 / 2e-103 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 304 / 3e-101 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 305 / 6e-101 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 288 / 7e-95 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 286 / 6e-94 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10023431 pacid=23160602 polypeptide=Lus10023431 locus=Lus10023431.g ID=Lus10023431.BGIv1.0 annot-version=v1.0 ATGGAGTGGTGGTCATGGAAGCTATGGAACAAAGCGAAGCCGTTTGCGGTGATGATCGCGATGCAATTCGGGTACGCTGGGATGTCAATCATCACCAAGT TCGCTCTCAGCGACGGACTCAGCCAGCACGTACTCGTCGTCTACAGACACATCGTTGCCACTGCCGTTATTGCACCTTTTGCCGCCTTCTTTGACAGGAA AGATAGGCCAGATATGACTCCTCGGATCTTCTTCAAGATAGCATTGCTTGGCTTGTTAGAGCCTGCAATTGATCAGAATCTGTACTATACTGGGATGAAG TTGACGACTGCAACTTTCGCCACTTCCATGAAGAACATCCTCCCTGCCTTCACATTCATCATGGCTTGCTTCTTTCGGCTGGAGAAAGTGAATTTGAGGG AGATGCACAGCCAGGGCAAAGTGCTGGGAACAATAGTGACAGTTGGCGGAGCTATGGTGATGACATGTGTCAAAGGCTCCAAATTGGAGCTTCCATGGAA GCTAAGCCTCGGGAGTGCATCAGCCACTGATTTACCAGAGGATGCTCAGGATCCTATAAAGGGCAGTCTCATGATCGTAGGCGGATGCATTTCCTGGGCC GGTTTCATGATTCTTCAATCAGTGACTGTGAGAGAGTACCCGGCGGAGTTGACCTTGACCGCCTTGATATGCATGATGGGAGCCATTGAAGGATCAGTTG CTGCAGTTTGGCTTGAATGGGACAACCCTTCTGCTTGGCACATTGCCTTTGACACCAAGTTGCTTGCTTGCGTATATACCGGAGTGATATGTTCTGGGGT GGCATACTATGCTCAAGGGGTGGTGATGAAGAGTCGTGGTCCGGTTTTCGTCACGGCGTTCAACCCGTTGGGGATGGTCATTGTCACAATTGCCGGTGCC TTCTTCTTGTCCGAGGAACTCTATTTAGGAAGGGTAATCGGAGCAGTGGTGATAGTGGTGGGACTGTATCTTGTGCTGTGGGGAAAGAAGAAAGACGTAG AGCAGCAAAACAACAACGAATGCGACGACGACACGAACAGTATCGACATCGTGACTACTGAAGCCATTCGTATCAACGATACTACCGATAATCAAAACTT CATTTCCTTTGAAATTTCAACTGTCTGA
AA sequence Show only first row Show all	>Lus10023431 pacid=23160602 polypeptide=Lus10023431 locus=Lus10023431.g ID=Lus10023431.BGIv1.0 annot-version=v1.0 MEWWSWKLWNKAKPFAVMIAMQFGYAGMSIITKFALSDGLSQHVLVVYRHIVATAVIAPFAAFFDRKDRPDMTPRIFFKIALLGLLEPAIDQNLYYTGMK LTTATFATSMKNILPAFTFIMACFFRLEKVNLREMHSQGKVLGTIVTVGGAMVMTCVKGSKLELPWKLSLGSASATDLPEDAQDPIKGSLMIVGGCISWA GFMILQSVTVREYPAELTLTALICMMGAIEGSVAAVWLEWDNPSAWHIAFDTKLLACVYTGVICSGVAYYAQGVVMKSRGPVFVTAFNPLGMVIVTIAGA FFLSEELYLGRVIGAVVIVVGLYLVLWGKKKDVEQQNNNECDDDTNSIDIVTTEAIRINDTTDNQNFISFEISTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	0	1
					Lus10003536 [exp]	3.5	1.0000
					Lus10011425 [exp]	4.9	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	6.2	1.0000
					Lus10029107 [exp]	6.7	1.0000
					Lus10022214 [exp]	11.8	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	12.6	1.0000
					Lus10009727 [exp]	12.8	1.0000
					Lus10028667 [exp]	13.3	1.0000
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10013328 [exp]	14.8	1.0000
					Lus10011642 [exp]	16.1	1.0000

Compare expression of checked genes

Lus10023431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.