Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 480 / 3e-170 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 428 / 8e-150 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 361 / 3e-123 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 350 / 6e-119 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 345 / 5e-117 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 337 / 4e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 333 / 1e-112 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 331 / 3e-112 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 328 / 7e-111 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 311 / 9e-104 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040311 [exp] 723 / 0 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 601 / 0 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 596 / 0 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 551 / 0 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 541 / 0 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 476 / 1e-168 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 475 / 2e-168 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 434 / 9e-152 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 436 / 2e-147 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 540 / 0 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 532 / 0 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 414 / 1e-144 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 374 / 8e-129 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 373 / 4e-128 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 366 / 2e-125 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 362 / 1e-123 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 355 / 8e-121 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 338 / 2e-114 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 333 / 4e-112 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10023432 pacid=23160551 polypeptide=Lus10023432 locus=Lus10023432.g ID=Lus10023432.BGIv1.0 annot-version=v1.0 ATGGAGTGCTGGTCTGCCAAGTTGTGTAACCAAGCAAAGCCATTTCTGGCTGTGACATTCATGCAATTTGGGTATGCTGGAATGTCCATCATCTCAAAGT TTGCTCTCAATCAAGGAATGAGCCAACATGTTCTTGTTGTCTATAGACATGCTGTCGCCACTGCTGTTCTTGCCCCCTTTGCCTTCTACTTCGACAGGAA GGTGAGACCAAAGATGACATGGGGGATCTTCCTCAAGATAGCACTCCTTGGTTTGTTAGAGCCGACAATCGATCAGAACTTGTACTACACTGGTATGAAG TACACATCAGCAACTTTTGCTGCTGCAATGTGCAATGTCCTCCCTGCCTTTGCATTCCTCATGGCGTGGGCATTAAGGCTTGAGAAAGTTAAGTTGAAGA AGGTGCACAGCCAGGCAAAGATTTTGGGGACAGTTGTGACAGTTGGGGGAGCCATGTTGATGACTTTGATCAAAGGTGCAAGATTGGACATGCCATGGAC CAAAGGAATTGACCATTCCTCTGCAACTTCACTAGTTGCTCAAGATCCTGTAAAGGGTGCTATCATGATAGCTGTTGGCTGCATTTGCTGGGCTGGTTTC ATCATCCTTCAAGCAATCACCTTGAAATCTTACCCGGCCGAGTTCTCCTTGGCTGCTTTGATCTGCTTGATGGGAACCATAGAAGGTTCGGTTTTCGCCA TTGGGATGGAGTGGGGGAACCCTTCTGCGTGGGTTGTTGGCTTTGACGCCAAGTTACTAGCTGCTGTTTATAGTGGTGTGATATGCTCAGGAATGGCATA CTACATTCAAGGAGTGGTGATGCAGACGAAAGGGCCGGTTTTCGTGACAGCATTCAGCCCTTTGAGCATGGTGATAGTCACAATCATGGGTTCCATTTTC TTGTCTGAGATTCTTTACATGGGAAGAGTTGTTGGAGCAATTGTGATAGTGACAGGATTGTACATGGTGCTGTGGGGTAAGACCAAAGATCAACCTCTAA CCAATTCAAATGATAAGGTGGCTGATTTGCCACCAGTTACTGCTGCTGCTGGTCCATCAGTTGAAGTCATGAACATTAATGAGAGGACACAAGATGGAGA GTTTGTTTCTATTGAAGTTTCAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10023432 pacid=23160551 polypeptide=Lus10023432 locus=Lus10023432.g ID=Lus10023432.BGIv1.0 annot-version=v1.0 MECWSAKLCNQAKPFLAVTFMQFGYAGMSIISKFALNQGMSQHVLVVYRHAVATAVLAPFAFYFDRKVRPKMTWGIFLKIALLGLLEPTIDQNLYYTGMK YTSATFAAAMCNVLPAFAFLMAWALRLEKVKLKKVHSQAKILGTVVTVGGAMLMTLIKGARLDMPWTKGIDHSSATSLVAQDPVKGAIMIAVGCICWAGF IILQAITLKSYPAEFSLAALICLMGTIEGSVFAIGMEWGNPSAWVVGFDAKLLAAVYSGVICSGMAYYIQGVVMQTKGPVFVTAFSPLSMVIVTIMGSIF LSEILYMGRVVGAIVIVTGLYMVLWGKTKDQPLTNSNDKVADLPPVTAAAGPSVEVMNINERTQDGEFVSIEVSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	0	1
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	3.6	0.8404
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	4.9	0.8235
AT3G27030			unknown protein		Lus10041550 [exp]	5.7	0.8007
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	10.9	0.7595
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	13.3	0.7593
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	13.7	0.7780
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	15.0	0.6670
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	16.2	0.7516
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	16.3	0.7774
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	19.1	0.7086

Compare expression of checked genes

Lus10023432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.