Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28710 110 / 7e-31 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 107 / 1e-29 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28200 108 / 7e-29 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46080 100 / 6e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 99 / 3e-26 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G53600 95 / 8e-25 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46070 94 / 2e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 90 / 1e-22 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G04390 92 / 5e-22 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 87 / 9e-21 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040312 [exp] 278 / 2e-96 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030330 [exp] 170 / 9e-54 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 130 / 5e-38 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021409 [exp] 96 / 4e-24 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 91 / 1e-22 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 87 / 1e-20 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 80 / 1e-18 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 81 / 2e-18 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10032848 [exp] 71 / 6e-15 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209400 [exp] 155 / 2e-48 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 153 / 2e-47 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 117 / 5e-33 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 112 / 3e-31 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G216900 [exp] 93 / 8e-23 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 89 / 7e-22 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 88 / 6e-21 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 87 / 1e-20 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 86 / 2e-20 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 85 / 8e-20 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023433 pacid=23160567 polypeptide=Lus10023433 locus=Lus10023433.g ID=Lus10023433.BGIv1.0 annot-version=v1.0 ATGAACATGCAAGAAACTATTGGAGAAATTCTAAACCTAACAGTTGCCAACTGCCTCGTGCTGCTCTCTCGACAACCTCGATACGACATCGTCGTTAGCG AGCGCGGATCCTCCTCCCCGAGCCGGGTCTTCGAGTGCAAGACCTGCAACCGGCAATTCTCTTCCTTTCAAGCCCTTGGAGGTCACCGTGCAAGTCACAA GAAGCATCCACTGCCCACCGGATGTTCCGAAGGATCTTTAAAGGTCGGTGGCCACCTGGAGAAGCAGGTGTTACCTACCATGCCCAAAGCCCATCAATGC TCCGTGTGTGGGCTTGAGTTTTCCGTAGGCCAGGCCCTTGGCGGCCACATGAGGAGGCATAGAGCCGCATCTGACCTGCCTGTTGTAGCCACCACCGTCA CATCTGGTGGTGGCAGCAACGGTGGATCTGAAGAGAGTTCGGAGAATCCGACGTTGCGGATGAAGAGAGCTAGAGTTTTGAGTCTGGATTTGAACTTGAC CCCTTATGAGAATGACGTGAAGCTGCTCAAGCTTGGGACAAATCACAATGCATCAATGGTGGATTTTTTCAATTAA
AA sequence Show only first row Show all	>Lus10023433 pacid=23160567 polypeptide=Lus10023433 locus=Lus10023433.g ID=Lus10023433.BGIv1.0 annot-version=v1.0 MNMQETIGEILNLTVANCLVLLSRQPRYDIVVSERGSSSPSRVFECKTCNRQFSSFQALGGHRASHKKHPLPTGCSEGSLKVGGHLEKQVLPTMPKAHQC SVCGLEFSVGQALGGHMRRHRAASDLPVVATTVTSGGGSNGGSEESSENPTLRMKRARVLSLDLNLTPYENDVKLLKLGTNHNASMVDFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	0	1
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	10.8	0.8575
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	17.0	0.8738
AT2G14095			unknown protein		Lus10001299 [exp]	21.2	0.8760
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	21.4	0.8342
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	25.1	0.8677
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	28.5	0.8637
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	32.0	0.8101
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10012307 [exp]	35.5	0.8245
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10027164 [exp]	35.9	0.8446
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	36.3	0.8623

Compare expression of checked genes

Lus10023433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.