Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39470 239 / 9e-80 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G55330 137 / 5e-40 PPL1 PsbP-like protein 1 (.1) AT3G05410 48 / 2e-06 Photosystem II reaction center PsbP family protein (.1.2) AT4G15510 46 / 8e-06 Photosystem II reaction center PsbP family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040314 [exp] 377 / 2e-134 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10030326 [exp] 153 / 2e-45 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 152 / 2e-45 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10018931 [exp] 52 / 7e-08 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 52 / 8e-08 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10000352 [exp] 49 / 6e-07 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10000614 [exp] 49 / 8e-07 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210000 [exp] 265 / 8e-90 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.010G210200 [exp] 148 / 5e-44 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1) Potri.008G050300 [exp] 71 / 8e-15 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1) Potri.005G010700 [exp] 49 / 9e-07 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 48 / 2e-06 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10023436 pacid=23160466 polypeptide=Lus10023436 locus=Lus10023436.g ID=Lus10023436.BGIv1.0 annot-version=v1.0 ATGGCTGTAGCTTCATCACTCTCATTGAGCTTGTTCTCAACAGCAGCAGCAGCAGCGAAAAGGATCACTCTTTCTTCCTTATCAGCCACCAATGACCCAT CCGCCAGCTTGTCATCGGACCGCGAAGAAGTTCGCAATTTGCAGAGAAGAAGACAGTTGCTTGTTGGGTTAGGAGGAGCAGTTGCTGCAAGCACCCTACT CCCGCTCCACTCTGCTTCTGCTGAAGAGATGATGAAGATGTACCGAACGTACATCGACCAGGAAGACGGGTACACTTACATCTACCCATCGGATTGGAGG GATTTCGATTTCCGGGGGCATGATTCTGCGTTCAAGGACAGGTACATGCAGCTGCATAATGTGAGGGTGAGGTTCATACCAACGAAGAAGAAGGATATCC ATGAGTTTGGTCCAATGGAGCAAGTCATCACTGATTTGATCAGTAAAGTCTACGCTGCTCCGACTCAAAGACCCACCATTTACTCCATGGAAGAGAAAAA CGTGGAGGGGACGAACTACTACACGTTTGAGTACGAGCTGAGATCTCCAAACTACGCCAGTGTCTCCTTCGCCACCATAGCCATCGCTAATGGGAGGTAT TACACACTGATAGTTGGTGCAAACGAGAGACGGTGGAAAAGATATCGTAACCAGCTCAAAGTCGTTGCTGATTCTTTCAAGTTGCTCGAAATCTGA
AA sequence Show only first row Show all	>Lus10023436 pacid=23160466 polypeptide=Lus10023436 locus=Lus10023436.g ID=Lus10023436.BGIv1.0 annot-version=v1.0 MAVASSLSLSLFSTAAAAAKRITLSSLSATNDPSASLSSDREEVRNLQRRRQLLVGLGGAVAASTLLPLHSASAEEMMKMYRTYIDQEDGYTYIYPSDWR DFDFRGHDSAFKDRYMQLHNVRVRFIPTKKKDIHEFGPMEQVITDLISKVYAAPTQRPTIYSMEEKNVEGTNYYTFEYELRSPNYASVSFATIAIANGRY YTLIVGANERRWKRYRNQLKVVADSFKLLEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	0	1
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	1.4	0.9768
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	3.0	0.9649
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	3.2	0.9660
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	4.0	0.9586
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	4.0	0.9618
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	4.6	0.9591
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	4.9	0.9561
AT4G27390			unknown protein		Lus10038584 [exp]	5.1	0.9538
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	5.9	0.9613
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	6.0	0.9497

Compare expression of checked genes

Lus10023436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.