Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55320 2316 / 0 ABCB20, PGP20 ATP-binding cassette B20, P-glycoprotein 20 (.1) AT2G39480 2308 / 0 ABCB6, PGP6 ATP-binding cassette B6, P-glycoprotein 6 (.1) AT2G47000 816 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT2G36910 530 / 4e-165 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G10680 508 / 2e-157 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 506 / 4e-156 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 504 / 1e-155 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 492 / 2e-151 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 472 / 6e-144 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G62150 463 / 3e-140 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040315 [exp] 2682 / 0 AT3G55320 2409 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Lus10035834 [exp] 782 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 521 / 5e-161 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10005249 [exp] 517 / 1e-160 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 516 / 4e-160 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004571 [exp] 496 / 2e-153 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10014427 [exp] 493 / 3e-152 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10036617 [exp] 465 / 2e-145 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10017271 [exp] 478 / 8e-145 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210100 [exp] 2388 / 0 AT3G55320 2237 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.008G050400 [exp] 2369 / 0 AT3G55320 2223 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.017G081100 [exp] 527 / 2e-164 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 509 / 9e-158 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.016G093600 [exp] 511 / 2e-157 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 509 / 1e-156 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139600 [exp] 506 / 2e-156 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 491 / 8e-151 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.014G113500 [exp] 481 / 4e-147 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 478 / 5e-146 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023437 pacid=23160624 polypeptide=Lus10023437 locus=Lus10023437.g ID=Lus10023437.BGIv1.0 annot-version=v1.0 ATGATGGTCTCGCGGGGACTGTTCGGTTGGTCCCCGCCTCATATACAGCCGTTGACGCCTGTTTCCGAGGTCTCGGAGCCCCCGGAGTCACCGTCACCGT ACCTCGACGTCAGCGCCGAGTCCGCCGCAGCTGCGGCGGCTGTGCAGGCGGATGCGGAGGAGGAGATGGAAGAAGCTGAGGAAATGGAGCAGCCTCCAGC TGCCGTGCCGTTCTCCAGGCTGTTTGCGTGTGCAGACCGGCTGGATTGGGCGCTTATGATCGTTGGCTCGATTGCTGCGGCTGCACATGGGACTGCTCTT GTGGTTTATTTGCATTATTTCGCCAAGGTTATTGAGGTCATGAGGATTGGGAGCAGTGCCAGTGCGGAGGAGCGGTATGATAAGTTCATGGATCTTGCTT TAACCATTGTTTATATAGCGGGGGGTGTTTTTGCTGCTGGTTGGATAGAGGTATCTTGTTGGATTCTAACCGGAGAACGTCAGACTGCCGTCATCAGGTC AAATTATGTTCAAGTACTACTTAACCAAGACATGAGCTTTTTCGACACATATGGTAATAATGGGGACATTGTGAGCCAAGTATTGAGTGATGTGCTTCTC ATTCAATCTGCTCTTAGCGAAAAGGTCGGAAACTATATACATAACATGGCCACATTTTTTGCTGGTCTTGCTATTGGATTCACCAACTGCTGGCAGATCA CACTCATAACATTAGCCACGGGCCCATTCATTGTTGCTGCAGGAGGAATATCTAATATATTTCTCCAACGACTTGCAGAAAGTATTCAGGATGCATATTC TGAAGCGGCTAGCATTGCTGAACAGGCGGTGTCTTACATCAGAACTTTGTATGCTTTCACAAACGAAACTTTGGCGAAGCATTCATATGCAAACTCTCTC CAAGCAACTCTAAGATATGGAATTTTAATTAGTCTTGTACAAGGACTTGGACTTGGCTTTACTTATGGGCTGGCAATATGTTCTTGTGCCTTGCAACTTT GGGTTGGAAGGTTCCTGGTTACTCATCATAAGGCTCATGCTGGTGAAATCGTAACAGCACTCTTTGCTGTGATTTTGAGTGGCCTAGGGCTAAATCAAGC AGCAACAAACTTCTATTCATTCGACCAAGGTCGAGTTGCTGCTTATAGACTTTTCGAGATGATAAGCAGGTCTTCCTCAACAGTTAATCAAGAAGGGAGC ATCTTATCTTCAGTTCAAGGAAATATTGAGTTTCGGAATGTATATTTTAGCTATCTTTCTCGTCCTGAAATTCCTATTTTGAGTGGCTTTTACCTCACTG TACCTGCAAAAAAGACCGTTGCACTTGTTGGCAGAAATGGGTCAGGAAAAAGTAGTATCATCCCACTTATGGAGCGGTTCTATGATCCTACCTTAGGAGA AGTTCTTCTCGATGGAGAGAATATAAAAAATTTGAAACTGGAATGGCTAAGAAGCCAAATCGGGCTTGTCACCCAGGAGCCTGCTTTGTTAAGTCTAAGT ATAAGAGACAATATTGCTTATGGACGTGATGCTACTCCAGATCAGATCGAAGAGGCAGCAAAAATAGCTCATGCCCATACCTTTATCAGCTTATTGGATG ATGGATATGCAACTCAGGTGAGTAGGGCCGGCATATCCTTGTCAGAGGAGCAGAAAATTAAGCTCTCTATTGCTCGGGCAGTGCTTTTAAACCCCGCAGT TCTTCTGCTCGATGAGGTTACAGGAGGGCTTGACTTTGAAGCTGAGAGGGCAGTTCAAGAGGTACTTGATCTCCTCATGCTGGGACGATCAACAATAATA ATTGCTCGACGTCTTAGTCTCATTAGGAATGCTGATTATATTGCTGTTATGGAAGAAGGTCAGCTTGTTGAAATGGGTACGCATGATGAACTGTTGACCT TAGACGGGTTGTACGCAGAGCTTCTGAAATGTGAAGAAGCTGCAAAGCTGCCCAGGAGCTATGATTTAATGCCAGTTAAAAATTACATGGATGCTTTCCA AGTTGAAAAAGATTCCTCCGCTAGTCACAGCTTCCAAGAACCGACCTCTCCCAAATTTTCCAAGTCTCCTTCTCTACAGAGAGTTCATGGAGTCTTGCGT CCTCCTGATGGGACCTATAGTTTGCACGAGTCTCCAAAAGATCAGAGTCCCCCTTCGGAGACAATGTTGAAAAATGGCCTCTCTGTGGATGGAACAGAAA AGGAACCATCAATCGTAAGGCAAGATAGTTTTGAAATGAGACTTCCTGAGCTACCCAAGATTGATGTCCATTCAATAGCTCAACAGAAAACAAATGGATC TGACCCTGAATCACCTGTATCTCCACTTTTGATATCTGATCCTAAAAATGAGCGTTCACACTCTCAGACTTTCAGTAGACCCCATAGTCACTCTGATGAT TTTCCTAGTAATCTTAAGGAGTCAAAGGATGCAAAGCATCGTGAAGCACCATCTTTTCAGAGACTTGCAGAACTCAGCTTTGCAGAATGGCTTTATGCTG TGTTAGGAAGCATTGGTGCAGCTATATTTGGCTCATTCAATCCACTTCTCGCTTATGTGATTGCTTTGATAGTTACTGCTTATCATAGAAGGGATGAACA TTCTCACTTGCGACATGAGGTAGACAAATGGTGCTTGATAATCGCCTGCATGGGTATCGTAACAGTTATTGCAAATTTTTTACAGCATTTCTATTTTGGT ATTATGGGGGAGAAAATGACAGAACGGGTGCGGAGAATGATGTTCTCAGCAATGCTGCGAAATGAAGTTGGATGGTTTGACGATGAGGATAATAGTGCAG ACACATTATCAATGCGGTTGGCGAATGATGCCACATTTGTGCGAGCTGCGTTTAGCAACCGACTTTCAATATTCATACAAGACAGTTCTGCAGTGATTGT GGCTGTTATCATTGGGATGTTACTACAATGGCGATTGGCCCTGGTAGCATTGGCAACCCTCCCTGTGCTCACCATTTCTGCAGTTGCGCAGAAATTGTGG CTTGCCGGATTTTCAAGGGGCATTCAGGAGATGCATCGGAAGGCTTCATTGGTTCTTGAGGATGCTGTTAGAAACATCTACACAGTCGTATCTTTCTGTG CTGGTAATAAAGTTATGGAACTCTACAGGTCACAGCTCCAGCAAATATTCAAGAAGAGCTTTTTGCACGGCGTGGTCATTGGGTTTGCATTTGGCTTTTC ACAGTTTCTTCTCTTTGCCTGTAATGCTCTACTGCTCTGGTATACTGCACATGCTGTGAAGAAAGGCCACATGAGTTTGTCGACAGCTCTCAAGGAATAC ATGGTTTTCTCTTTCGCAAGCTTTGCACTGGTCGAGCCTTTTGGATTGGCACCTTACATACTTAAGCGGCGAAAATCCCTTATCTCAGTGTTCGATATTA TAGATAGAGTGCCGAACATTGAGCCTGACGAGACCTCAGCACTGAAACCTCCAAATGTCTATGGAAGCATTGAGTTGAAGAATGTTGATTTCTGCTACCC GACCCGTCCAGAACTCTTAGTATTAAGCAATTTCAGTCTCAAAATCAACGGTGGACAAACTATAGCCGTGGTGGGTGTATCAGGTTCGGGAAAGAGCACT ATCATATCTCTGATTGAGAGATTCTACGACCCGGTTGCCGGTCAGATTCTACTCGATGGCCGCGATTTGAAACTTTACAACTTGAGATGGCTGAGAAGCC ACATGGGTCTTGTGCAGCAGGAACCGATTATATTCTCAACGACCATACGAGAAAATATCATCTATGCTAGGCACAATGCCAGTGAAGCCGAAATGAAAGA AGCTGCTAGAATAGCAAACGCTCATCATTTCATCAGCAGTCTGCCTCATGGTTACGACACTTACGTCGGGATGAGAGGTGTGGACTTGACACCGGGGCAG AAGCAACGAATTGCCATTGCTCGGGTGGTGCTGAAGAACGCACCGATACTATTACTTGACGAAGCAAGCTCATCGATTGAGTCTGAATCAAGCCGAGTGG TACAGGAGGCACTGGATACTCTGATAATGGGGAACAAGACCACCATCTTGATAGCGCATAGAGCGGCGATGATGAGACATGTCGACAATATTGTGGTTCT GAACGGAGGACGAATCGTTGAGGAAGGGTCCCACGACTCTTTGATGGCGAAGAATGGGTTATATGTCAGATTAATGCAGCCTCACTTTGGGAAGGGCTTG CGTCAACATCGTCTCATTTAG
AA sequence Show only first row Show all	>Lus10023437 pacid=23160624 polypeptide=Lus10023437 locus=Lus10023437.g ID=Lus10023437.BGIv1.0 annot-version=v1.0 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDVSAESAAAAAAVQADAEEEMEEAEEMEQPPAAVPFSRLFACADRLDWALMIVGSIAAAAHGTAL VVYLHYFAKVIEVMRIGSSASAEERYDKFMDLALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLL IQSALSEKVGNYIHNMATFFAGLAIGFTNCWQITLITLATGPFIVAAGGISNIFLQRLAESIQDAYSEAASIAEQAVSYIRTLYAFTNETLAKHSYANSL QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHHKAHAGEIVTALFAVILSGLGLNQAATNFYSFDQGRVAAYRLFEMISRSSSTVNQEGS ILSSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLS IRDNIAYGRDATPDQIEEAAKIAHAHTFISLLDDGYATQVSRAGISLSEEQKIKLSIARAVLLNPAVLLLDEVTGGLDFEAERAVQEVLDLLMLGRSTII IARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLKCEEAAKLPRSYDLMPVKNYMDAFQVEKDSSASHSFQEPTSPKFSKSPSLQRVHGVLR PPDGTYSLHESPKDQSPPSETMLKNGLSVDGTEKEPSIVRQDSFEMRLPELPKIDVHSIAQQKTNGSDPESPVSPLLISDPKNERSHSQTFSRPHSHSDD FPSNLKESKDAKHREAPSFQRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIALIVTAYHRRDEHSHLRHEVDKWCLIIACMGIVTVIANFLQHFYFG IMGEKMTERVRRMMFSAMLRNEVGWFDDEDNSADTLSMRLANDATFVRAAFSNRLSIFIQDSSAVIVAVIIGMLLQWRLALVALATLPVLTISAVAQKLW LAGFSRGIQEMHRKASLVLEDAVRNIYTVVSFCAGNKVMELYRSQLQQIFKKSFLHGVVIGFAFGFSQFLLFACNALLLWYTAHAVKKGHMSLSTALKEY MVFSFASFALVEPFGLAPYILKRRKSLISVFDIIDRVPNIEPDETSALKPPNVYGSIELKNVDFCYPTRPELLVLSNFSLKINGGQTIAVVGVSGSGKST IISLIERFYDPVAGQILLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTYVGMRGVDLTPGQ KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLMAKNGLYVRLMQPHFGKGL RQHRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	0	1
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	1.0	0.9475
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	3.5	0.8957
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	8.1	0.8936
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	8.4	0.9062
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	9.5	0.8645
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	9.9	0.8805
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	10.1	0.8971
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	10.5	0.8819
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10037656 [exp]	10.7	0.8940
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	11.2	0.8928

Compare expression of checked genes

Lus10023437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.