Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 185 / 4e-61 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 182 / 6e-60 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030325 [exp] 224 / 2e-76 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 222 / 1e-75 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040316 [exp] 218 / 1e-73 AT3G55280 202 / 2e-67 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005441 [exp] 213 / 9e-72 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 212 / 2e-71 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 209 / 1e-70 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 214 / 2e-66 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 88 / 1e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 88 / 1e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 206 / 4e-69 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 202 / 1e-67 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 201 / 2e-67 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 201 / 3e-67 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 197 / 7e-66 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023438 pacid=23160473 polypeptide=Lus10023438 locus=Lus10023438.g ID=Lus10023438.BGIv1.0 annot-version=v1.0 ATGGCACCTAAAGCTGATGTTACGAAGAAGGCTGATCCAAAGGCACAAGCAACTAAGGCTGCCAAGGCTGTGAAGTCAGGGCCGACTTTCAAGAGGAACC CTAAGAAGATCAGGACAAAGGTCACATTCCACCGCCCCAGGACACTGAAGAAGGAGAGGAACCCCAAGTACCCTCGTATCAGTGCTCCTCCCAGGAACAA GCTTGACCATTACCAGATTCTGAAGTTCCCACTCACTACTGAGTCTGCAATGAAAAAGATAGAGGACAACAACACCTTGGTTTTCATCGTTGACATCCGT GCCGATAAGAAGAAGATCAAAGATGCAGTGAAAAAGATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCGGATGGAACCAAGAAGGCTT ATGTCAGGTTGACCCCGGATTATGATGCATTGGATGTTGCTAACAAGATTGGCATTATTTAG
AA sequence Show only first row Show all	>Lus10023438 pacid=23160473 polypeptide=Lus10023438 locus=Lus10023438.g ID=Lus10023438.BGIv1.0 annot-version=v1.0 MAPKADVTKKADPKAQATKAAKAVKSGPTFKRNPKKIRTKVTFHRPRTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIR ADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10023438 [exp]	0	1
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	13.1	0.8904
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	13.2	0.9008
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	15.1	0.8954
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032962 [exp]	15.7	0.8891
AT5G02050			Mitochondrial glycoprotein fam...		Lus10024351 [exp]	15.7	0.8836
AT3G53740			Ribosomal protein L36e family ...		Lus10025342 [exp]	15.9	0.8814
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	16.9	0.8988
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	22.2	0.8772
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	23.1	0.8632
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	36.1	0.8869

Compare expression of checked genes

Lus10023438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.