Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39450 575 / 0 ATMTP11 Cation efflux family protein (.1) AT1G79520 455 / 9e-160 Cation efflux family protein (.1.2) AT1G16310 454 / 4e-159 Cation efflux family protein (.1) AT3G58060 342 / 3e-115 Cation efflux family protein (.1) AT2G47830 54 / 9e-08 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040318 [exp] 739 / 0 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 413 / 6e-142 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 407 / 1e-140 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 353 / 7e-120 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 352 / 3e-119 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 124 / 3e-33 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 80 / 2e-18 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 51 / 1e-06 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049600 [exp] 646 / 0 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 645 / 0 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 444 / 3e-155 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 439 / 2e-153 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 427 / 6e-149 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 412 / 6e-143 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 391 / 1e-134 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.003G215600 [exp] 340 / 1e-114 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 336 / 4e-113 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.001G010200 [exp] 333 / 4e-112 AT3G58060 540 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10023439 pacid=23160644 polypeptide=Lus10023439 locus=Lus10023439.g ID=Lus10023439.BGIv1.0 annot-version=v1.0 ATGGCGGAGCACGGTGGCGGTGGCTTACAAGAGGAAGGGCTTTCCCTTCTCAACCTAGAAAGCAATGGCGTCGACCGCTCATGGCGGCTGAACTTCGATG GATACCAGTTGTCGCCAGAGCAGAAAGAGAAAAAGCCCCGAGGTATCCACGATTGCTGTCCTGGTGTTACAGGTCCAGAAGATCATATAGCGGTGTACTA TCAGCAGCAGGTAGAAATGCTTGAGGGTTTCACTGAAATGGATGCCTTAGCAGACCGTGGATTTATCCCTGGAATGACCAAGGAAGAGGAAGAAAAGTTG GCTAAAAGTGAGACATTTGCCATTAGAATCTCCAACGCTGCCAATCTGGTTCTTTTTGCTGCAAAGGTTTATGCTTCAGTCAGAAGTGGCTCGTTGGCCA TCATTGCATCTACATTGGACTCTCTCCTTGATCTTCTTTCGGGATTCATCCTCTGGTTTACTGCATTCTCCATGCAAACCCCAAACCCTTATCAGTATCC AATTGGAAAAAAACGAATGCAACCGCTGGGCATTCTTGTGTTTGCATCTGTAATGGCGACTCTAGGACTGCAGATCATCTTGGAATCAGCCCGTACATTA ATATCTGATGATAAAGCATTTGGTCTGACCAAAGATCAAGAGCGTTGGGTTGTCGGCATAATGCTCTCAGTAACCGTCGTCAAACTGCTTCTGATGATTT ACTGCCGCACATTCACCAATGAGATCATCAAAGCTTACGCCCAGGATCACTTCTTCGATGTGGTGACCAACTTCATCGGCCTTTTCGCCGCGCTTCTTGC TAATTACGTCGACGATTGGATGGACCCCGGCGGAGCCATAATTCTGGCGTTGTACACAATTCGTACGTGGTCAATGACGGTGCTGGAAAACGTGCACTCG CTCGTTGGCAAATCGGCAACCCCAGACTATCTCCAAAAGCTGACCTACCTCTCGTGGAACCATCACAAAGCCATCAGACACATTGACACGGTCAGGGCTT ACACGTTCGGTTCGCACTACTTTGTGAAGGTTGGAATTGTGTTGCCTGCAGATATGCCACTGCAGGAGGCTCACGATATTGGGGAGTCCCTTCAGGAGAA GCTGGAGCTGCTCCCGGAGATAGAGAGAGCTTTCGTTCATCTCGATTACGAGTACAGCCACAAACCGGAACACGCTCAATCGTAA
AA sequence Show only first row Show all	>Lus10023439 pacid=23160644 polypeptide=Lus10023439 locus=Lus10023439.g ID=Lus10023439.BGIv1.0 annot-version=v1.0 MAEHGGGGLQEEGLSLLNLESNGVDRSWRLNFDGYQLSPEQKEKKPRGIHDCCPGVTGPEDHIAVYYQQQVEMLEGFTEMDALADRGFIPGMTKEEEEKL AKSETFAIRISNAANLVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESARTL ISDDKAFGLTKDQERWVVGIMLSVTVVKLLLMIYCRTFTNEIIKAYAQDHFFDVVTNFIGLFAALLANYVDDWMDPGGAIILALYTIRTWSMTVLENVHS LVGKSATPDYLQKLTYLSWNHHKAIRHIDTVRAYTFGSHYFVKVGIVLPADMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYSHKPEHAQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10023439 [exp]	0	1
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	6.6	0.8472
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	8.3	0.8666
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	11.2	0.8532
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	12.0	0.8350
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	13.8	0.8646
AT2G16365			F-box family protein (.1.2.3.4...		Lus10040438 [exp]	20.4	0.7637
AT4G17960			unknown protein		Lus10030960 [exp]	22.4	0.7985
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	27.2	0.8366
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10023229 [exp]	28.6	0.7861
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	28.6	0.8352

Compare expression of checked genes

Lus10023439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.