Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75270 311 / 4e-109 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 303 / 1e-105 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 271 / 2e-92 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19550 194 / 8e-64 Glutathione S-transferase family protein (.1) AT5G02790 57 / 9e-10 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 55 / 6e-09 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G78370 52 / 3e-08 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78320 50 / 2e-07 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT2G02390 47 / 2e-06 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02380 45 / 8e-06 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040320 [exp] 395 / 6e-138 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10023442 [exp] 334 / 6e-118 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 264 / 5e-88 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 253 / 8e-83 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10005367 [exp] 53 / 2e-08 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10019895 [exp] 54 / 3e-08 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10020519 [exp] 53 / 3e-08 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10030020 [exp] 52 / 3e-08 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10005592 [exp] 52 / 6e-08 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049300 [exp] 315 / 2e-110 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.010G211600 [exp] 263 / 2e-90 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.017G125100 [exp] 261 / 3e-88 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.004G080400 [exp] 63 / 6e-12 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.010G061200 [exp] 61 / 3e-11 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.008G046800 [exp] 60 / 9e-11 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.016G118500 [exp] 56 / 2e-09 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 55 / 5e-09 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 54 / 8e-09 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.011G114000 [exp] 54 / 1e-08 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023441 pacid=23160629 polypeptide=Lus10023441 locus=Lus10023441.g ID=Lus10023441.BGIv1.0 annot-version=v1.0 ATGGCCGTGGAGATCGCAGTGAAGGCAGCCGCTGGTGCACCAGATCTTCAAGGGGACTGTCCGTTTTGCCAGAGAGTACAGTTGACATTAGAAGAGAAGA AGGTTGCTTACAAGCTGCATCTAGTCAATCTCAGTGATAAACCTCAGTGGTTTCTGGACATAAGCCCTGAAGGGAAGGTTCCAGTGGTGAAATTTGATGA CAAATGGGTTGCTGATTCCGATGTCATTGTTGGGATATTAGAGGAGAAATATCCTGAACCTTCTCTTGTCACTCCTGATGAATTTTCCTCTGTGGGTTCG AAGATCTTCATATCGTTTATCAACTTCCTGAAGAGCAAGGACTCGAGTGATGGCGCAGAGCAGGCTTTGGTTGAGCAGCTGAAGGCACTTGATGAGCATC TCAAGGCACATGGTCCCTTTATTGCAGGGGAGAAGATAACCGGTGTCGATTTGAGCTTGGCTCCGAAACTGTATCATCTGGAGACAGCTCTTGGCCATTT CAAGAAGTGGAGTATTCCTCAAGACTTGACTCATGTGCACAGTTACTTGAAGACATTGTTCACCCGCGAGTCCTTTGAGAAGACCAAGCCTGAGAAGGAA TATGTGATTGCTGGTTGGGCACCAAAGGTCAATGCATGA
AA sequence Show only first row Show all	>Lus10023441 pacid=23160629 polypeptide=Lus10023441 locus=Lus10023441.g ID=Lus10023441.BGIv1.0 annot-version=v1.0 MAVEIAVKAAAGAPDLQGDCPFCQRVQLTLEEKKVAYKLHLVNLSDKPQWFLDISPEGKVPVVKFDDKWVADSDVIVGILEEKYPEPSLVTPDEFSSVGS KIFISFINFLKSKDSSDGAEQALVEQLKALDEHLKAHGPFIAGEKITGVDLSLAPKLYHLETALGHFKKWSIPQDLTHVHSYLKTLFTRESFEKTKPEKE YVIAGWAPKVNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023441 [exp]	0	1
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	4.1	0.7886
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10010569 [exp]	4.9	0.7642
AT1G79390			unknown protein		Lus10001838 [exp]	5.8	0.7860
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10035924 [exp]	11.9	0.7852
AT5G67490			unknown protein		Lus10000389 [exp]	15.7	0.7583
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	17.1	0.7719
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	25.9	0.7519
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	28.5	0.7559
AT4G00530			unknown protein		Lus10037854 [exp]	30.3	0.7565
AT3G15395			unknown protein		Lus10039067 [exp]	30.3	0.6947

Compare expression of checked genes

Lus10023441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.