Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75270 316 / 7e-111 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 308 / 1e-107 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 283 / 5e-97 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19550 190 / 5e-62 Glutathione S-transferase family protein (.1) AT5G02790 59 / 3e-10 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 57 / 9e-10 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G17180 46 / 4e-06 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G09640 46 / 7e-06 Translation elongation factor EF1B, gamma chain (.1.2) AT1G78340 44 / 4e-05 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G78370 43 / 5e-05 ATGSTU20 glutathione S-transferase TAU 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040320 [exp] 414 / 2e-145 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10023441 [exp] 350 / 4e-124 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 264 / 5e-88 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 248 / 6e-81 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10021103 [exp] 57 / 1e-09 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10021102 [exp] 54 / 7e-09 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10042469 [exp] 54 / 2e-08 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10019895 [exp] 52 / 8e-08 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10003994 [exp] 52 / 8e-08 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049300 [exp] 313 / 1e-109 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.017G125100 [exp] 279 / 2e-95 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.010G211600 [exp] 260 / 1e-89 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.011G140800 [exp] 57 / 6e-10 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 57 / 1e-09 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1) Potri.011G113100 [exp] 57 / 1e-09 AT1G17180 268 / 2e-91 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 56 / 2e-09 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 54 / 7e-09 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.004G080400 [exp] 54 / 9e-09 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113300 [exp] 54 / 1e-08 AT1G17180 274 / 9e-94 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023442 pacid=23160495 polypeptide=Lus10023442 locus=Lus10023442.g ID=Lus10023442.BGIv1.0 annot-version=v1.0 ATGGTATTGAAGTTGGAGATCGCAGTGAAGGGTGCCGTTGGTGCCCCACATCTTCAAGGAGACTGTCCATTTTCCCAGAGAGTTCAGCTGACATTGGAAG AGAAGAATGTTTCTTACAACCCACATTTCATCAATATCGCTGATAAACCAAAGTGGTTCTTGGAGATCAACCCTGGCGGCAAAGTTCCAGTGGTGAAATT TGATGAAAAATGGGTGTCTGATTCAGATGTCATTGTTGGAATACTGGAAGAGAAATATCCTGAACCCTCTCTGGCCACTCCTCCTGAATTTGCCTCTGTG GGTTTGAAGATCTTCGATTCGTTCGTCAGCTTCTTGAAGAGCAAGGACTCAAGTGATGGAACAGAAGAGGCTTTGGTTAATCAGCTGAAGGCACTCAATG ACCATCTCAAGACACATAGTCCCTTTATTGCTGGAGAGAAGATCAGTGCTGTTGATTTGAGCTTGGCTCCAAAACTGTACCATCTGGAGACTGCTCTTGC CCATTTCAAGAAGTGGAGCATTCCTGAAGAATTGACTCATGTCCACAGTTACTTGAAGGCATTGTTCTCCCGTGAATCGTTTCAGAAGACCAAGGCTGAG AAGCAATATGTCATTGCTGGATGGGCACCCAAGGTCAATCCATGA
AA sequence Show only first row Show all	>Lus10023442 pacid=23160495 polypeptide=Lus10023442 locus=Lus10023442.g ID=Lus10023442.BGIv1.0 annot-version=v1.0 MVLKLEIAVKGAVGAPHLQGDCPFSQRVQLTLEEKNVSYNPHFINIADKPKWFLEINPGGKVPVVKFDEKWVSDSDVIVGILEEKYPEPSLATPPEFASV GLKIFDSFVSFLKSKDSSDGTEEALVNQLKALNDHLKTHSPFIAGEKISAVDLSLAPKLYHLETALAHFKKWSIPEELTHVHSYLKALFSRESFQKTKAE KQYVIAGWAPKVNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	4.0	0.8469
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	7.1	0.8845
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Lus10014762 [exp]	8.5	0.8133
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	10.2	0.8809
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	10.5	0.8435
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10040320 [exp]	17.5	0.8084
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	19.1	0.8643
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10041214 [exp]	20.4	0.8338
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	23.7	0.8353
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	28.6	0.8368

Compare expression of checked genes

Lus10023442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.