Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55200 2212 / 0 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 2212 / 0 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT4G21100 234 / 6e-63 DDB1B damaged DNA binding protein 1B (.1) AT4G05420 227 / 1e-60 DDB1A damaged DNA binding protein 1A (.1.2) AT3G11960 92 / 2e-18 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT5G51660 61 / 4e-09 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040321 [exp] 2350 / 0 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10033455 [exp] 179 / 1e-45 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10020922 [exp] 137 / 2e-32 AT4G21100 1606 / 0.0 damaged DNA binding protein 1B (.1) Lus10017295 [exp] 79 / 3e-14 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10013542 [exp] 74 / 6e-13 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10031692 [exp] 59 / 3e-08 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031111 [exp] 56 / 3e-07 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048900 [exp] 2345 / 0 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.010G212100 [exp] 2333 / 0 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.001G357900 [exp] 228 / 7e-61 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.006G197200 [exp] 74 / 9e-13 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Potri.012G022700 [exp] 68 / 4e-11 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03178 [flax] [poplar] CPSF_A CPSF A subunit region
Representative CDS sequence Show only first row Show all	>Lus10023443 pacid=23160628 polypeptide=Lus10023443 locus=Lus10023443.g ID=Lus10023443.BGIv1.0 annot-version=v1.0 ATGTATCTCTACAGTCTCACGCTCCAACGAGCCACCGGCATAGTGTCCGCTATCAACGGCAGCTTCTCCGGCGGCAAGGCCCAGGAGATTGTCGTCGCGC GGGGAAAGCTTCTTGACCTTCTCCGTCCCGACGACACCGGTAAGCTCCAAACGATTCTCTCCGTTGAAATCTTCGGTGCTATTCGCTCTTTAGCTCAGTT TAGGCTGACTGGATCTCAGAAGGATTACATCGTGGTTGGTTCTGATTCCGGTAGGATTGTGATTCTGGATTACAACAAGGAGAAGAATGTGTTCGATAAA GTTCACCAGGAGACATTTGGGAAGTCCGGGTGTAGGAGGATAGTTCCCGGCCAGTACTTGGCGGTCGATCCCAAGGGGAGGGCGGTTATGATTGGAGCTT GTGAGAAACAGAAGTTGGTCTATGTTTTGAATAGGGATACTGTAGCTAGGTTAACGATATCCTCGCCGTTGGAGGCGCACAAGTCGCACACCATTGTTTA CTCCATTTGCGGGGTTGATTGCGGGTTTGATAATCCCATATTCGCGTCCATTGAGTTGGATTATTCCGAGGCCGACCAGGATGCAACTGGGCAGGCAGCA AATGAGGCACAAAAGCATTTGACTTTTTATGAGCTTGATTTAGGGCTTAATCATGTGTCTCGGAAGTGGTCGGAGCCAGTTGATAACGGAGCTAATATGC TTGTCACGGTTCCTGGAGGTGGTGATGGACCAAGTGGAGTGTTGATTTGTGCTGAGAATTTTGTTATTTACAAGAACCAAGGACATCCAGATGTAAGGGC TGTGATTCCCAGGCGTGCTGATTTGCCTGCTGAGCGTGGGGTGTTGATAGTTTCTGCTGCGACTCATAAGCAGAAGTCCATGTTTTTCTTCTTGCTGCAG ACAGAATATGGTGACATTTTTAAAGTCACGCTGGAGTATGATAATGATAAGGGTTCAGTTTCAGAGGTGAAGATAAAGTATTTTGATACAATCCCAGTTA CAGCCTCAATGTGCGTGCTTAAATCTGGGTTTCTGTTTGCTGCATCAGAGTTTGGAAACCATGCATTGTATCAGTTTCAGGCTATTGGGGAGGACCCGGA CGTGGAGGCATCTTCAGCCACTTTAATGGAAACAGAGGAGGGTTTCCAGCCTGTGTTTTTCCAGCCAAGGGGGTTGAAGAATCTTGTTAGAATTGATCAG GTTGAAAGTTTGATGCCTATTATGGACATGAAAATTGTAAATCTGTTTGATGAAGAAACACCTCAGATATTCTCCCTCTGTGGTCGTGGGCCTCGGTCAT CCTTGAGGATTTTGAGGCCTGGCTTAGCTATAAGTGAGATGGCTGTGTCACAGCTTCCTGGTGTCCCGAGTGCAGTTTGGACTGTGAAGAAGAATGCCAG TGATGAGTTTGATGCATACATTGTTGTGTCTTTTAACAATGCCACTTTGGTTCTTTCTATTGGAGAGACAGTTGAGGAAGTTAGTGATAGTGGGTTTCTT GATACTACTCCTTCCCTTTCTGTTTCTCTGCTGGGTGATGACTCTTTGATGCAAGTTCACCCAAATGGTATAAGGCATATAAGGGAAGACGGGCGTATCA ACGAGTGGAGAACTCCTGGAAAGAGGACAATTGTAAAAGTTGGCTCTAACAGACTTCAAGTGGTTATTGCTCTGAGTGGGGGAGAGCTTATATATTTTGA GGTGGACATGACTGGTCAGCTGATGGAGGTTGAAAAACATGAGATGTCTGGTGATGTAGCTTGCTTGGACATTGCCCCAGTCCCTGAAGGAAGGCAGAGG TCTAGGTTTCTTGCAGTTGGTTCGTATGACAACATCATCCGTATCCTGTCTTTGGATCCTGATGATTGCATGCAGATTCTGAGTGTCCAAAGTGTTTCAT CAACTCCTGAATCCCTCCTATTTCTTGAGGTGCAGGCATCGATAGGTGGCGAAGATGGTGCTGATCACCCCGCTAGTCTGTTCATTAATGCTGGTTTGCA GTCTGGGGTTCTGTTTAGGACAGTGGTGGATATGGTGACAGGCCAGCTCTCTGATTCTCGCTCTCGGTTCTTAGGATTGAGGGCTCCAAAGCTCTTTTCA ATAAATGTGCGAGGTCGTCGGGCGATGCTATGCTTATCGAGTCGACCCTGGCTTGGTTATATTCACCAAGGGCATTTCCTGCTAACACCGCTATCATACG AGACTCTTGAATATGCTGCTTCATTCTCATCTGATCAGTGTGCAGAAGGTGTTGTTGCTGTTGCTGGCGATGCACTCAGGATTTTCACTGTCGAAAGGTT GGGTGAAACATTTAATGAAACTGCAATTCCCCTCAGGTATACTCCAAGGAAGTTTGTAATTCAACCCAAGCGGAAACTTCTGGTTATTGTAGAGAGTGAT ATGGGAGCATATACAGCGGAAGAACGGGAGGCAGCCAAAAAAGAGTGTTTTGAGGCTGCTGGTATGGGGGAAAATGGAACTGCCAATCAGCAGATGGAGA ATGGTGATGACGAAGAAAAAGAGGATCCCCTCTCAGATGAGCAATATGGTTACCCGAAGGCCGAGTCGGACAAATGGGTCTCTTGCATCAGGGTCCTGGA CCCAAGGACAGCAACCACAACCTGTCTACTAGAGCTTCAAGACAATGAAGCTGCCTTTAGTGTATGTACGGTTAATTTCCACGATAAGGAACATGGTGCT CTTTTGGCTGTTGGTACAGCAAAGGGGTTGCAGTTTTGGCCAAAGAGAACTTTAACTGCCGGGTTTATTCACATTTATAAATTTGTGGACGAAGGTAGAA GCCTTGAGCTTTTGCACAAGACACAAGTGGAAGGTGTGCCACTTGCTTTGTGCCAGTTTCAAGGTAGATTATTGGCTGGAATAGGCTCTGTACTAAGACT ATATGACTTGGGGAAAAAGAGGCTGCTCAAGAAATGCGAGAATAAGCTATTCCCAAACACAATTATCTCTATTCAGGCTTATCGTGATCGCATTTATGTT GGTGACATTCAAGAGTCTTTCCATTTCTGCAAATATAGACGGGATGAGAATCAACTCTACATATTTGCTGATGATAGTGTTCCAAGGTGGCTTACAGCAT CACAACATATAGATTTCGATACCATGGCAGGTGCAGACAAGTTTGGGAATATCTATTTTGCGAGGTTGCCACAGGACGTGTCTGACGAGATAGAGGAAGA TCCAACCGGGGGAAAGATTAAATGGGAGCAGGGAAAACTCAATGGAGCTCCTAACAAGGTTGAAGAAATAGTACAGTTTCATGTTGGAGATGTGGTTACT AGTGTGCAAAAAGCGTCCCTGATTCCCGGCGGAGGAGAGTGCATGATTTACGGTACAGCCATGGGTAGCTTGGGGGCATTGCTGCCGTTCAATTCGAGGG ATGACGTTGACTTCTTCTCGCACTTGGAAATGCACTTGAGACAGGATCATCCACCCTTGTGCGGGAGGGATCATATGGCGTATCGATCTTCTTACTTTCC AGTGAAGGACGTGATCGATGGGGATCTATGTGAACAGTTCCCGACATTGCCTCTTGATGTGCAAAGGAAAATTGCTGACGAGTTGGACAGAACTCCAGGA GAGATATTAAAAAAACTTGAGGAAGTCAGGAACAAGATTGTTTAA
AA sequence Show only first row Show all	>Lus10023443 pacid=23160628 polypeptide=Lus10023443 locus=Lus10023443.g ID=Lus10023443.BGIv1.0 annot-version=v1.0 MYLYSLTLQRATGIVSAINGSFSGGKAQEIVVARGKLLDLLRPDDTGKLQTILSVEIFGAIRSLAQFRLTGSQKDYIVVGSDSGRIVILDYNKEKNVFDK VHQETFGKSGCRRIVPGQYLAVDPKGRAVMIGACEKQKLVYVLNRDTVARLTISSPLEAHKSHTIVYSICGVDCGFDNPIFASIELDYSEADQDATGQAA NEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLICAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ TEYGDIFKVTLEYDNDKGSVSEVKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFQAIGEDPDVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQ VESLMPIMDMKIVNLFDEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNASDEFDAYIVVSFNNATLVLSIGETVEEVSDSGFL DTTPSLSVSLLGDDSLMQVHPNGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQR SRFLAVGSYDNIIRILSLDPDDCMQILSVQSVSSTPESLLFLEVQASIGGEDGADHPASLFINAGLQSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFS INVRGRRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRIFTVERLGETFNETAIPLRYTPRKFVIQPKRKLLVIVESD MGAYTAEEREAAKKECFEAAGMGENGTANQQMENGDDEEKEDPLSDEQYGYPKAESDKWVSCIRVLDPRTATTTCLLELQDNEAAFSVCTVNFHDKEHGA LLAVGTAKGLQFWPKRTLTAGFIHIYKFVDEGRSLELLHKTQVEGVPLALCQFQGRLLAGIGSVLRLYDLGKKRLLKKCENKLFPNTIISIQAYRDRIYV GDIQESFHFCKYRRDENQLYIFADDSVPRWLTASQHIDFDTMAGADKFGNIYFARLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVT SVQKASLIPGGGECMIYGTAMGSLGALLPFNSRDDVDFFSHLEMHLRQDHPPLCGRDHMAYRSSYFPVKDVIDGDLCEQFPTLPLDVQRKIADELDRTPG EILKKLEEVRNKIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	0	1
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10040321 [exp]	1.0	0.9850
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	2.0	0.9433
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	2.4	0.9664
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10033404 [exp]	3.0	0.9566
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10033983 [exp]	4.7	0.9334
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	6.9	0.9298
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	7.3	0.9380
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10031129 [exp]	7.5	0.9371
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	7.5	0.9376
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10006070 [exp]	8.4	0.9418

Compare expression of checked genes

Lus10023443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.