Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 142 / 7e-40 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 138 / 4e-38 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 115 / 2e-29 SCPL44 serine carboxypeptidase-like 44 (.1) AT2G12480 114 / 3e-29 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT5G42230 112 / 8e-29 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G23210 112 / 9e-29 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G02110 112 / 2e-28 SCPL25 serine carboxypeptidase-like 25 (.1) AT5G42240 111 / 3e-28 SCPL42 serine carboxypeptidase-like 42 (.1) AT4G15100 106 / 2e-26 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G11080 105 / 4e-26 SCPL31 serine carboxypeptidase-like 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040324 [exp] 209 / 4e-65 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10021856 [exp] 208 / 9e-65 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 205 / 2e-63 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 203 / 1e-62 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040322 [exp] 186 / 3e-60 AT1G28110 134 / 4e-38 serine carboxypeptidase-like 45 (.1.2) Lus10010330 [exp] 183 / 4e-59 AT1G28110 132 / 3e-37 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 193 / 9e-59 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 184 / 1e-55 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 181 / 3e-54 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036000 [exp] 167 / 7e-49 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 163 / 2e-47 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 161 / 7e-47 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 144 / 3e-40 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 140 / 6e-39 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 140 / 1e-38 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.003G164000 [exp] 135 / 3e-37 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 135 / 5e-37 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 129 / 6e-35 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.017G094100 [exp] 115 / 1e-29 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10023444 pacid=23160479 polypeptide=Lus10023444 locus=Lus10023444.g ID=Lus10023444.BGIv1.0 annot-version=v1.0 ATGGATTCTCAGTTGTGGATTGTCATGTTCATCATTTCAGAAGCTCTGGGCTCGAATTCCGGAACAGTTGAGTCGTCACATGAAGCTGACAGGATTGCGA AGTTGCCAGGTCAGCCCGATGTTAGCTTCCAGCAGTATGCAGGTTATGTGACTGTTGATGAAATCCAGCAGAGGAAACTTTTCTACTACTTTGCTGAAGC TCAGACCAATCCTATTTCCAAGCCACTTGTTCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCAGTCGGAGCTGGAGCTTTCTCCGAGCATGGTCCTTTC AAACCAAATGCTTCTGGTGTTCTGAAAGCAGGGCAGTCCATAGATCTTTGTGTACAAGACGAGTCGGAAACGCACTTGAAAAGGAAAGATGTTCAACAAA CGATGCATGCTCAGCTTGGTGGTGTGACCAGCTGGAGTTTCTGCAGCCAGGTGATAAATTATGACAACAGCTACATGGAGATCCCAACGATCGGAGTGGT GGGTTCATTGGTGAGTTCAGGGATCCGAGTTCTGGTCTACAGCGGGGATCAAGACTCAGTGGTTCTGTTCATTGGAACAAGGACTCTGGTGAATCGCTTG GCTAAAGGAATGGGATTGAACACGACAGTTTCGTACAAGCCATGGTTTGACACTGACAAACAGGTTGACGGATGGACGCAGTATATGGGTAGAAGAAGCA ACTGGGATTCGCAATAA
AA sequence Show only first row Show all	>Lus10023444 pacid=23160479 polypeptide=Lus10023444 locus=Lus10023444.g ID=Lus10023444.BGIv1.0 annot-version=v1.0 MDSQLWIVMFIISEALGSNSGTVESSHEADRIAKLPGQPDVSFQQYAGYVTVDEIQQRKLFYYFAEAQTNPISKPLVLWLNGGPGCSSVGAGAFSEHGPF KPNASGVLKAGQSIDLCVQDESETHLKRKDVQQTMHAQLGGVTSWSFCSQVINYDNSYMEIPTIGVVGSLVSSGIRVLVYSGDQDSVVLFIGTRTLVNRL AKGMGLNTTVSYKPWFDTDKQVDGWTQYMGRRSNWDSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	0	1
					Lus10021782 [exp]	4.4	0.9774
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	6.2	0.9774
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	7.1	0.9402
AT4G16195			Plant self-incompatibility pro...		Lus10011069 [exp]	7.5	0.9369
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	7.5	0.9774
					Lus10043281 [exp]	8.3	0.8325
					Lus10023587 [exp]	8.7	0.9774
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	9.3	0.7865
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10031542 [exp]	9.7	0.9774
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	9.9	0.9272

Compare expression of checked genes

Lus10023444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.