Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 390 / 6e-133 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 382 / 5e-130 Eukaryotic aspartyl protease family protein (.1) AT2G35615 311 / 7e-102 Eukaryotic aspartyl protease family protein (.1) AT1G31450 286 / 4e-92 Eukaryotic aspartyl protease family protein (.1) AT2G28010 222 / 6e-68 Eukaryotic aspartyl protease family protein (.1) AT2G28030 216 / 5e-66 Eukaryotic aspartyl protease family protein (.1) AT2G28040 215 / 1e-65 Eukaryotic aspartyl protease family protein (.1) AT2G03200 206 / 4e-61 Eukaryotic aspartyl protease family protein (.1) AT1G01300 204 / 2e-60 Eukaryotic aspartyl protease family protein (.1) AT3G61820 192 / 8e-56 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040325 [exp] 728 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 668 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 566 / 0 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 562 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 553 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 551 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 454 / 9e-158 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 431 / 7e-149 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 423 / 2e-145 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 383 / 5e-130 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 364 / 1e-122 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 313 / 6e-103 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 210 / 5e-63 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 206 / 2e-61 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 202 / 2e-59 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 197 / 1e-57 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 178 / 2e-50 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 175 / 3e-49 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 174 / 9e-49 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10023445 pacid=23160570 polypeptide=Lus10023445 locus=Lus10023445.g ID=Lus10023445.BGIv1.0 annot-version=v1.0 ATGACGACATTGATCCATCTTGCATTTTCGTTAGCTACATTTATGTGCATCGTTTCGACACTGGTTAAGGCTCAGAGCAGTCAGGGGTTTAGTATGGATT TAGTCCACCGTGACTCATCTGATTCCCCTTTCTACAACCCCGAGGAGACGCCGGCTCAAAGAGTCAATAATGCTGCTAGGCGATCCGTGGCTAGAGTCCA TCGCTTCAGCAACATCATTCATCATAGTATTGGTTCTTCTTCTAGTTCCAAATCGGACGATCCCAATGCTTTGTTAACGGCTAACAACGGTGAGTACTTG GTCAATATCTCTCTTGGCACGCCACCGTTCCCTATAGTGGCCATTGCTGATACAGGTAGTGACATCATATGGACGCAATGCAAGCCGTGCAACAACTGTT ACAAGCAGGATGCTCCGGTGTTTGACCCCAAATCCTCCACTACTTATAGAACGATAGCTTGTTCTTCAGACGCTTGTAATTCCCTCCAAAGTGAAGGAAG TTCGTGCTCTTCGAATGGACAAGTTTGTGAGTATCAAGTGAGCTATGGGGATCAATCCCACACCCAGGGAGATGTAGCATCTGAAACACTCACACTAGGC TCCACAACTGGTCGTCTTGTGGCACTTCCTAAGACAGTGATTGGTTGTGGGCACGACAACGCTGGAACCTTTGACCCGAAAGGTTCTGGTATCGTTGGAC TTGGAGGCGGCTCTGCTTCCCTAGTTTCTCAACTTGGCTCTTCCATTGCCGGAAAATTCTCTTACTGTCTCGTCCCATACACTTCTACAAACCCCACCAG TACTATGCACTTCGGCACAAACGCTGTTGTATCAGGTAGCAATGTTGTGTCCACTCCCTTGATTTCCGATCCATCTGAACCCACGTTTTACTTCCTTCAA CTCGAAGCCATCAGTGTTGGGAGCAAGAAGATTCCGTTCCAAACTTCATCCATCGGAAGTTCTGGCGGCAACATTATAATCGACTCCGGGACCACGCTAA CCCTTGTCCCTGGCCATGTTTTCTCACAACTATCTGATGCTGTGGAGAGCCAGGTCAGTGGCGGAACCAAGGCGAGCGACCCACAAGGGTTTTTCAGCTT GTGCTACGTCATAGACTCGAATCTTAAAGTTCCTCCAGTAATGGCTCATTTCAAAGGAGCAGACTTGCCTATGACATCGGACAACATTTTCATCCACGTC ACTGAAAAGATTATGTGCTTGGCCTTCTATACTAACGATGAGTTAAGCATCTATGGAAACGTTGCGCAACAAAACTTCTTAATCGGCTACGACCTTCAGA AACACACCCTCTCCTTCAAGCCTACCGATTGCCTTAAGACTACATGA
AA sequence Show only first row Show all	>Lus10023445 pacid=23160570 polypeptide=Lus10023445 locus=Lus10023445.g ID=Lus10023445.BGIv1.0 annot-version=v1.0 MTTLIHLAFSLATFMCIVSTLVKAQSSQGFSMDLVHRDSSDSPFYNPEETPAQRVNNAARRSVARVHRFSNIIHHSIGSSSSSKSDDPNALLTANNGEYL VNISLGTPPFPIVAIADTGSDIIWTQCKPCNNCYKQDAPVFDPKSSTTYRTIACSSDACNSLQSEGSSCSSNGQVCEYQVSYGDQSHTQGDVASETLTLG STTGRLVALPKTVIGCGHDNAGTFDPKGSGIVGLGGGSASLVSQLGSSIAGKFSYCLVPYTSTNPTSTMHFGTNAVVSGSNVVSTPLISDPSEPTFYFLQ LEAISVGSKKIPFQTSSIGSSGGNIIIDSGTTLTLVPGHVFSQLSDAVESQVSGGTKASDPQGFFSLCYVIDSNLKVPPVMAHFKGADLPMTSDNIFIHV TEKIMCLAFYTNDELSIYGNVAQQNFLIGYDLQKHTLSFKPTDCLKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	4.0	0.8890
					Lus10024827 [exp]	4.7	0.7091
					Lus10004437 [exp]	5.7	0.8890
AT5G51490			Plant invertase/pectin methyle...		Lus10031141 [exp]	6.5	0.7210
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	6.9	0.8890
					Lus10021739 [exp]	8.0	0.8890
					Lus10039674 [exp]	8.9	0.8890
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	9.8	0.8890
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	10.6	0.8890
AT1G07060			unknown protein		Lus10031856 [exp]	11.0	0.5390

Compare expression of checked genes

Lus10023445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.