Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 442 / 1e-152 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 440 / 7e-152 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G43780 327 / 3e-107 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 318 / 4e-104 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 312 / 1e-101 SCPL41 serine carboxypeptidase-like 41 (.1) AT4G30610 294 / 8e-95 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G12480 285 / 9e-92 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G35780 285 / 2e-91 SCPL26 serine carboxypeptidase-like 26 (.1) AT5G23210 280 / 7e-89 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G02110 278 / 2e-88 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040326 [exp] 850 / 0 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 761 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 704 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 691 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 683 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 680 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 566 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 564 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10030315 [exp] 555 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036000 [exp] 561 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 558 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 556 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 499 / 3e-175 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 495 / 3e-173 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.012G105500 [exp] 464 / 4e-161 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 451 / 2e-156 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 444 / 2e-153 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 429 / 1e-147 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 309 / 2e-100 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10023447 pacid=23160646 polypeptide=Lus10023447 locus=Lus10023447.g ID=Lus10023447.BGIv1.0 annot-version=v1.0 ATGGGTTCTCTGTTATGGATTGTCATGTTCATTATTTCTGCAGCTTTGGCTTCGAATTTCGGAACAGTCGAGTCGTCATATGAGGCTGACAAGATAGTGA AGTTGCCAGGTCAGCCAGATGTTAGCTTCCAGCACTCAGACCAACTCCACTTCCAAGCCACTTGTTCTCTGGCTCTTCTCTGGCTAAACGGAGGACCTGG TTGCTCTTCGGTTGGAGCTGGAGCTTTCTCCGAGCATGGTCCTTTCAAGCCAAATGCTAACGGAGGTCTTATCAGCAATGACTACAGTTGGAACAAAGAA GCAAACATGCTGTACTTGGAATCTCCAGCAGGAGTTGGATTCTCGTATTCAGCCAACACCTCTTTCTATAAATTGGTTAATGACACCATAACAGCAAACG ACAACTTCGTGTTCCTACAACAATGGCTACTCAAGTTTCCTGAGTACAAGACCAGAGATCTTTTCATCACTGGAGAGAGCTATGCTGGACACTATGTGCC TCAACTGGCCCAACTCGTCGTCGAGTCAGGAGCATCGAGCTTTAAAGGCATAGCTATAGGAAATCCATTGTTGGAGTTCAACACAGATCTGAACGGGCAA GGAGAATACTACTGGTCACATGGATTGATCTCCGACCATACATATGACCTTGTGAACACAATATGTAACATGTCACAGCTCCAGAGAGAAGGAATTGCGG ACAATCTTTCGCAACCGTGTAGCATCGTGCAAGCACGCTTGGATGAAGAGATTCCTCATCAACGTTCATTCAGTGGGTATGATGTCACTTCTGATGTTTG TATATCAGAAGATGGTGAATCAAAGCTGCAGGAACAGTCTTTAGTTGCAAGTTTACGTCCATTTTCGACCTTGAAGTCCACGCAAGGTCTTCTTGGAAAA CTGGATGCTGCAGGAGAAGAACACATAGACCTTTGTATACAGTCAAAGACGAACAAGTATTTGAACAGGAAAGATGTTCAACAAGCTTTGCATGCCAACC TTGTTGGTGTTACTGCTTGGAGTTTCTGCAGCGATGTGGTGAATTATGACTACAACAATCTGGAGATCCCTACAATCGGAGTGGTGGGTTCATTGGTGAC TTCAGGGATCCAAGTACTGATCTACAGTGGGGATCAAGATTCAGTGCTTCCATTCATTGGAACAAGAACTGTAGTCAACAATTTGGCCCAACAGATGATG CTCAACACAACTGTGCCTTACAAGCCATGGTTTGACACTGACAAACAGGTCGGTGGATGGACGCAAGTGTATGGGGATGAGAAGAAGCAGTTGGGATTTG CATCCATTAGAGGAGCATCTCACTTGGCTGCATTTTCTTCTCCAAAGAGGTCACTCGCATTGTTTGCTGCATTCGTCGCTGGGAAATCGTTGGCTGTTTG A
AA sequence Show only first row Show all	>Lus10023447 pacid=23160646 polypeptide=Lus10023447 locus=Lus10023447.g ID=Lus10023447.BGIv1.0 annot-version=v1.0 MGSLLWIVMFIISAALASNFGTVESSYEADKIVKLPGQPDVSFQHSDQLHFQATCSLALLWLNGGPGCSSVGAGAFSEHGPFKPNANGGLISNDYSWNKE ANMLYLESPAGVGFSYSANTSFYKLVNDTITANDNFVFLQQWLLKFPEYKTRDLFITGESYAGHYVPQLAQLVVESGASSFKGIAIGNPLLEFNTDLNGQ GEYYWSHGLISDHTYDLVNTICNMSQLQREGIADNLSQPCSIVQARLDEEIPHQRSFSGYDVTSDVCISEDGESKLQEQSLVASLRPFSTLKSTQGLLGK LDAAGEEHIDLCIQSKTNKYLNRKDVQQALHANLVGVTAWSFCSDVVNYDYNNLEIPTIGVVGSLVTSGIQVLIYSGDQDSVLPFIGTRTVVNNLAQQMM LNTTVPYKPWFDTDKQVGGWTQVYGDEKKQLGFASIRGASHLAAFSSPKRSLALFAAFVAGKSLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10023447 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10027430 [exp]	5.3	0.6803
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025408 [exp]	8.7	0.6027
					Lus10002152 [exp]	10.7	0.6027
					Lus10010117 [exp]	12.3	0.6027
					Lus10005187 [exp]	13.8	0.6027
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	14.7	0.5825
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10040338 [exp]	15.1	0.6027
AT2G25010			Aminotransferase-like, plant m...		Lus10008761 [exp]	16.3	0.6027
					Lus10039750 [exp]	17.7	0.6018
					Lus10006424 [exp]	25.2	0.4726

Compare expression of checked genes

Lus10023447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.