Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39420 461 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 431 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 428 / 3e-147 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 422 / 8e-145 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 375 / 4e-126 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 349 / 8e-116 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 345 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 270 / 3e-85 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 268 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 242 / 4e-74 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040328 [exp] 644 / 0 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 349 / 2e-115 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040327 [exp] 318 / 1e-101 AT2G33530 350 / 5e-116 serine carboxypeptidase-like 46 (.1) Lus10030366 [exp] 277 / 2e-88 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 277 / 3e-88 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 261 / 6e-82 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018466 [exp] 258 / 2e-81 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 256 / 2e-79 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10017600 [exp] 254 / 2e-79 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212200 [exp] 464 / 4e-161 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 461 / 5e-160 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 347 / 5e-115 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 343 / 2e-113 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 291 / 1e-92 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 260 / 1e-81 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 247 / 1e-75 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 205 / 1e-60 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 202 / 2e-59 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 194 / 3e-56 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33 CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10023448 pacid=23160516 polypeptide=Lus10023448 locus=Lus10023448.g ID=Lus10023448.BGIv1.0 annot-version=v1.0 ATGGCGAGAATAGCTGAAGGTGTTAAATATACCGAGGAATTCATCCTGAATCCGAGAGGGATGAAGCTGTTTACGTGCAAGTGGTTGGCGGTGAGCCAAG AGCCGAAAGCTCTCATCTTTCTGTGTCATGGATACGCCATGGAGTCCAGCATTACCATGGACAGCACGGCGATGAGGCTGGCGAAACAAGGGTTTGGAGT ATACGCGATGGATTACGAAGGGCATGGGAAATCGGCAGGATTACAGGGATACATTGACAACTTTGATTTCGTGGTCGATGATTGCTCCAGACATTTCGTC ACCATATGCGAGGAGAAAGAGAACAGAGGGAAGAGAAGATATCTGATGGGGGAGTCCATGGGAGGTGCAGTCACGTTGCTGCTTCACAGGAAGCTCCCCA GTTTCTGGGACGGCGCCGTTTTGGTTGCTCCGATGTGTAAGATAGCCGACGACGTGAAGCCACCGCAACTGGTGATCAGCGCTCTCACAAAACTAAGCTA CATCATCCCGACATGGAGGATCGTCCCGACCAAGGACATAATTGACACGGCGTTCAAAGTCCCCGAAATAAGGAAACAAATCAGGGAGAATCCTCTGTGC TACAAGGGCCGTCCGCGCTTGAAGACCGCGTTCGAGCTCTTGAGGACCAGCATCGACATCGAGAAGCGGCTCTCCGAGGTGATGATGCCGTTCCTTCTCC TCCACGGCCAGGACGACAGAGTGACCGAGAAGTCGATCAGCAAGCAGCTGTACGACGTGGCGTCGAGCAAGGACAAGACGATGAAGTTGTACGACGGGAT GTGGCACGGGTTGCTGTACGGAGAAGTGCCGGAGAATATTGAAGTGGTGTTTAAGGATATTACTGAGTGGCTGGACGAGAGGAGTAGGGACTGTTCGAGT CCGGAGCTTGAAATGGAGCACAAGCTTGAGAATGATTACAAGTTGCAGCTGACCGGATTGCGAGACTGCCCGGGCAGCCAGCTGGAGAGGCCGGGTTCGG GCAGTTTGCAGGGTACCATAACAGTTGACGATGTGCTTCAAACTAGGCTGTTTTATTACTTTATTGAAGCTCAGTCTGAACCAGCTTCCAAGCCTCTTGT TCTCTGGCTTGGTGACCAGCAGGAGTGCTCAAATCTTGGAGGGTTTTCTGGCAATGGTCCATTCAGCCCTGTGAGTGGAGATGTTTTGGCATGGAATCGC TATGCTTTCAACAAAATTTCTGACCATTTGAAGAAGAACTCGTTGGATTCCAGACCAAGTATTTTTTATGTTCCAGAGGTGAATGTAAAATACTTGGACT CGCCAGTTGGGACAGGATTTTCTTATTCTGCCAACATTTCTGATCAACCCACTCTTGATGACAGCATTATAGATTCGAAGCTTTTGCAGTCACTCGCAAG TCGCAAAGAAGCTTCATCAGAGGGAAATGATGTCTGTCTGAGGGTGAAGATCTCCGAGTATTTGAACCGAGAAGATGTTCAGAAAGCGCTTAATGTTACG AAAGCTAACTGGATCATATGTTCAATGGATATTGATTATGACAAGAGGCAGTGGGAGAATACTACTATCGATTTGGTTGGTTCTTTAGTGGAGAGAGGGA TAAGAGTGCTGATATACAGTGTCGATGAGATGACATTTGTACCATTTCTGGGTACGAGGGTTTTGGTCAATGACTTGGCCAAGAAGATAGGGCTCAACAC AACAGTGGCTTATCAAGGATGGTTTGACTCTGACAATCAGGTTGGTGGATGGACAAATGCCTATGGGGAAGCTCTGACATACGCGAGTATTCGAGGAGGG TCTGCCAAGGTTCCCAAGAGATCGCTCTCGCTGTTGCAGTCGTTTGTAGCAAGGAAGCTATTAAGTACTGCTGGATGA
AA sequence Show only first row Show all	>Lus10023448 pacid=23160516 polypeptide=Lus10023448 locus=Lus10023448.g ID=Lus10023448.BGIv1.0 annot-version=v1.0 MARIAEGVKYTEEFILNPRGMKLFTCKWLAVSQEPKALIFLCHGYAMESSITMDSTAMRLAKQGFGVYAMDYEGHGKSAGLQGYIDNFDFVVDDCSRHFV TICEEKENRGKRRYLMGESMGGAVTLLLHRKLPSFWDGAVLVAPMCKIADDVKPPQLVISALTKLSYIIPTWRIVPTKDIIDTAFKVPEIRKQIRENPLC YKGRPRLKTAFELLRTSIDIEKRLSEVMMPFLLLHGQDDRVTEKSISKQLYDVASSKDKTMKLYDGMWHGLLYGEVPENIEVVFKDITEWLDERSRDCSS PELEMEHKLENDYKLQLTGLRDCPGSQLERPGSGSLQGTITVDDVLQTRLFYYFIEAQSEPASKPLVLWLGDQQECSNLGGFSGNGPFSPVSGDVLAWNR YAFNKISDHLKKNSLDSRPSIFYVPEVNVKYLDSPVGTGFSYSANISDQPTLDDSIIDSKLLQSLASRKEASSEGNDVCLRVKISEYLNREDVQKALNVT KANWIICSMDIDYDKRQWENTTIDLVGSLVERGIRVLIYSVDEMTFVPFLGTRVLVNDLAKKIGLNTTVAYQGWFDSDNQVGGWTNAYGEALTYASIRGG SAKVPKRSLSLLQSFVARKLLSTAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10023448 [exp]	0	1
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	1.4	0.9326
AT4G32295			unknown protein		Lus10002918 [exp]	9.6	0.9448
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	15.3	0.9164
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	21.7	0.9243
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	22.7	0.9293
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	24.7	0.9281
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	26.6	0.9265
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	30.7	0.9263
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	35.3	0.9251
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	39.3	0.9177

Compare expression of checked genes

Lus10023448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.