Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02610 150 / 8e-48 Ribosomal L29 family protein (.1.2) AT2G39390 150 / 9e-48 Ribosomal L29 family protein (.1) AT3G09500 148 / 6e-47 Ribosomal L29 family protein (.1) AT3G55170 145 / 9e-46 Ribosomal L29 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003306 [exp] 162 / 1e-52 AT3G09500 218 / 6e-75 Ribosomal L29 family protein (.1) Lus10030314 [exp] 160 / 9e-52 AT3G09500 214 / 2e-73 Ribosomal L29 family protein (.1) Lus10019179 [exp] 156 / 3e-50 AT5G02610 210 / 7e-72 Ribosomal L29 family protein (.1.2) Lus10025292 [exp] 152 / 9e-49 AT5G02610 221 / 5e-76 Ribosomal L29 family protein (.1.2) Lus10024437 [exp] 146 / 4e-46 AT5G02610 218 / 6e-75 Ribosomal L29 family protein (.1.2) Lus10019180 [exp] 112 / 6e-33 AT5G02610 172 / 4e-57 Ribosomal L29 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212300 [exp] 156 / 3e-50 AT2G39390 213 / 4e-73 Ribosomal L29 family protein (.1) Potri.006G214200 [exp] 154 / 3e-49 AT2G39390 186 / 3e-62 Ribosomal L29 family protein (.1) Potri.008G048800 [exp] 152 / 1e-48 AT5G02610 177 / 1e-58 Ribosomal L29 family protein (.1.2) Potri.006G214100 [exp] 151 / 4e-48 AT2G39390 189 / 2e-63 Ribosomal L29 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0346 [flax] [poplar] Ribo_L29 PF00831 [flax] [poplar] Ribosomal_L29 Ribosomal L29 protein
Representative CDS sequence Show only first row Show all	>Lus10023449 pacid=23160603 polypeptide=Lus10023449 locus=Lus10023449.g ID=Lus10023449.BGIv1.0 annot-version=v1.0 ATGCAATTCCAGCCGCCGGTGAAGAGAACGTCAGAAAATACACTCGTAAAATCCAGAATCAAGGTCCACGAGCTGAGGCTGAAGAACAAGTTGGAACTTT TGAATCAGCTCAAGGATCTCAAGGCTGAGCTTGCTCTTCTCCGCGTCGCCAAGGTCACCGGCGGCGCTCCTAACAAGCTGTCCAAGATCAAGGTGGTGCG GTTGTCTATTGCCCAAGTGTTGACAGTGATCTCACAGAAGCAGAAAGCTGCACTTCGTGAAGTGTACAAGAACAAGAAGCTGTTGCCTCTTGACCTCCGT CCCAAGAAGACCAGAGCCATCAGAAGGAGGCTTACCAAGCACCAGCAATCTCTTAAGACGGAGAGGGAGAAGAAGAGGGAAATGTACTTCCCCATGAGGA AGTATGCGATCAAGGTGTAG
AA sequence Show only first row Show all	>Lus10023449 pacid=23160603 polypeptide=Lus10023449 locus=Lus10023449.g ID=Lus10023449.BGIv1.0 annot-version=v1.0 MQFQPPVKRTSENTLVKSRIKVHELRLKNKLELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKLLPLDLR PKKTRAIRRRLTKHQQSLKTEREKKREMYFPMRKYAIKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02610			Ribosomal L29 family protein ...		Lus10023449 [exp]	0	1
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	2.0	0.9652
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	2.0	0.9595
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	6.2	0.9348
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	7.4	0.9468
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	9.6	0.9485
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	9.6	0.9491
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	9.9	0.9396
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	13.0	0.9392
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	13.2	0.9463
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	14.1	0.9467

Compare expression of checked genes

Lus10023449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.