Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 445 / 1e-149 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 428 / 4e-143 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT5G59730 379 / 8e-124 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT3G09520 371 / 5e-121 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT3G09530 340 / 9e-109 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT1G07725 328 / 1e-104 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28640 325 / 1e-103 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT2G28650 273 / 5e-84 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 228 / 1e-66 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT5G50380 229 / 2e-66 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040329 [exp] 989 / 0 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 488 / 1e-166 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 469 / 5e-159 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10040872 [exp] 440 / 1e-147 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 435 / 1e-145 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10005436 [exp] 427 / 1e-142 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 425 / 1e-141 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10024438 [exp] 389 / 1e-127 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10025291 [exp] 383 / 2e-125 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212400 [exp] 536 / 0 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 496 / 8e-170 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G234600 [exp] 465 / 9e-158 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 446 / 3e-150 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.006G214300 [exp] 404 / 6e-134 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.012G097100 [exp] 247 / 2e-73 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 240 / 1e-70 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 230 / 3e-67 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 229 / 7e-67 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 213 / 8e-61 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10023450 pacid=23160465 polypeptide=Lus10023450 locus=Lus10023450.g ID=Lus10023450.BGIv1.0 annot-version=v1.0 ATGACCCTGACAAGAAAAGGGATGATGATTCCTCATCTCTTCCAATCATCAAAGAAAACCCTTTTATCTCCTCTCAATTCCTTCTCATCCTATCCTTCTC CGCTCCCTCCGAATTCCCCTCTCCGCTCCCCCGACTTCTCTCCTTCGACGATAGAAGAAGACATCGCGATTTCCGAATCAGTCATCTCTAAATGGGATCT CAAATCATCCTCCACCTCATTTGACAGAAAGGAGCTCCTGAAATGCGTCAAGGATCTTCGAAAGGCCATGCATTTCCTAGCGTCAGGAAAACATCCTGAT AATCCTGCAGGAAAGCTTCAGCTTTGCCAGAAACTGATGCAGATTGCCATGACAAGGCTGGAGAGAGAGTTCTACCACATCCTGACTGGAATCCGGGATC ACCGTCATCAGCTTGATTCTGAATCCGTTTCGGTTCACTCCTCAGCTGAACCTGAAATTTCCGAGGAATCAGTTCCCGAAGGAGCTTCTTCTATGTCGGA TCTGAAATCAATCGCTGACTGTATGATAAGTGCAGGCTACACTAAAGAGTGTCTCAAGATTTACCTGCTCATCAGGAAATCCATCATGGACGAAAACCTG TACCTGCTCGGTGTTGAGCATCACTACAAGTCTTCGCCAGTCCAGAGACTGAATCCAGAAGCCCTCGAGACCATGATCAGAATCTGGCTGAACGCTGTGA ACTCCGGTGTGAAAAAACTGTTTCTTGGAGAGAAGTTCCTCTGTGATCATGTGTTCTCAGCTTATGATAGAACCAGAGAACTCTGTTTCTCAGAGTTGGT TAAAGAAGGAGCAGAAAACCTGTTCAGGTTTCCTGAACTAGTGGTTAAGAACAAGCAGTTAAAGGACAGAAGAAGAATATTCCCATTAATGGATCTCTAT GAAGCACTCTCCAACCTATGGCCAGAGATAGAATCAATGTTCAGCTGCGAGTCGACTCGAGCAGTCAAACAGCAAGCTCATTCTTCATTAATCAAGGTAG GGGACTCGGTTCGCAGGATATTGTCCGAGTTCGAATCAGCAATCCAAAAGGATCACTCTAGAAACTCGGTCTCTAGTGGAGGAATCCATCCACTGACAAG ATCTGTCAGGGATGCGGTATCAGTCAGGCTAGCCTGGCTGATACTTAACTTGCTGTGCAAGCTAGACAGGATAGCAGAAAGACAGTACAAATCAGATGTG TCGCTTTCGTACCTTTTCCTGGCTAATAATTTACAGTTCATCATTGAGAAAGTATGCACGACCCGGTTAAGGGTCGTGCTAGGCGAGGATTGGGTGTACA AACATGTCAGCAAGGCTAAACAATATGCCGGAAGCTACGAGACAATGGCATGGAACAAAGTGTTCTTAGCCATATTACCAACTGTAAAGAATAGTCCTTT TCCAGAACTATCAGGTGAAGAAGTGGAGCAATGTTTCGTTCGGTTCAATGCTGCTTTCGAGGAATCGCACAGGAAGCAGGTGTCGTGGATCGTGCCAAAT CGGAAGTTTAGAGACGAATTGAAGGTCTCGATTGCGAGGAAACTTGTGCCGGCTTACAGAGAGTTTTATGATGCATATGTGGGGATGGTGGTGGGGTTGG AAGGTGTTGTGAAGTTTGGTCCTGATGATCTGGAGAATTACTTGTCTGATCTGTTTCATGGTGCTTCTGAATCTGGAAGTTGCTCAGAGTCGTCGTCAGA GTCTTCTGGAGGAAAAAGTGTGAATGAGTTATTATTAGCTAATAGAATATTATAA
AA sequence Show only first row Show all	>Lus10023450 pacid=23160465 polypeptide=Lus10023450 locus=Lus10023450.g ID=Lus10023450.BGIv1.0 annot-version=v1.0 MTLTRKGMMIPHLFQSSKKTLLSPLNSFSSYPSPLPPNSPLRSPDFSPSTIEEDIAISESVISKWDLKSSSTSFDRKELLKCVKDLRKAMHFLASGKHPD NPAGKLQLCQKLMQIAMTRLEREFYHILTGIRDHRHQLDSESVSVHSSAEPEISEESVPEGASSMSDLKSIADCMISAGYTKECLKIYLLIRKSIMDENL YLLGVEHHYKSSPVQRLNPEALETMIRIWLNAVNSGVKKLFLGEKFLCDHVFSAYDRTRELCFSELVKEGAENLFRFPELVVKNKQLKDRRRIFPLMDLY EALSNLWPEIESMFSCESTRAVKQQAHSSLIKVGDSVRRILSEFESAIQKDHSRNSVSSGGIHPLTRSVRDAVSVRLAWLILNLLCKLDRIAERQYKSDV SLSYLFLANNLQFIIEKVCTTRLRVVLGEDWVYKHVSKAKQYAGSYETMAWNKVFLAILPTVKNSPFPELSGEEVEQCFVRFNAAFEESHRKQVSWIVPN RKFRDELKVSIARKLVPAYREFYDAYVGMVVGLEGVVKFGPDDLENYLSDLFHGASESGSCSESSSESSGGKSVNELLLANRIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	0	1
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040329 [exp]	1.7	0.7325
AT2G24230			Leucine-rich repeat protein ki...		Lus10035826 [exp]	7.0	0.7136
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	10.8	0.7522
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10033183 [exp]	25.3	0.6993
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	26.7	0.7190
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	31.2	0.7236
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	34.6	0.6809
AT1G02570			unknown protein		Lus10025023 [exp]	35.4	0.7143
AT2G28780			unknown protein		Lus10005903 [exp]	59.3	0.6624
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	76.1	0.6604

Compare expression of checked genes

Lus10023450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.