Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23945 225 / 1e-68 Eukaryotic aspartyl protease family protein (.1) AT4G30030 219 / 9e-67 Eukaryotic aspartyl protease family protein (.1) AT4G30040 184 / 4e-53 Eukaryotic aspartyl protease family protein (.1) AT5G33340 155 / 2e-42 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G31450 143 / 5e-38 Eukaryotic aspartyl protease family protein (.1) AT1G64830 141 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT2G35615 135 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT2G03200 128 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT4G12920 126 / 3e-32 UND UNDEAD, Eukaryotic aspartyl protease family protein (.1) AT2G28030 124 / 2e-31 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031450 [exp] 540 / 0 AT4G30030 231 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10011615 [exp] 525 / 0 AT2G23945 224 / 5e-68 Eukaryotic aspartyl protease family protein (.1) Lus10031449 [exp] 504 / 1e-177 AT2G23945 219 / 3e-66 Eukaryotic aspartyl protease family protein (.1) Lus10015486 [exp] 406 / 7e-138 AT2G23945 248 / 3e-76 Eukaryotic aspartyl protease family protein (.1) Lus10002276 [exp] 333 / 1e-110 AT2G23945 206 / 2e-61 Eukaryotic aspartyl protease family protein (.1) Lus10002275 [exp] 279 / 7e-90 AT2G23945 164 / 7e-46 Eukaryotic aspartyl protease family protein (.1) Lus10019960 [exp] 265 / 3e-84 AT2G23945 256 / 5e-81 Eukaryotic aspartyl protease family protein (.1) Lus10004064 [exp] 238 / 2e-71 AT4G30040 156 / 3e-41 Eukaryotic aspartyl protease family protein (.1) Lus10011612 [exp] 212 / 6e-68 AT4G30030 64 / 4e-13 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179500 [exp] 260 / 3e-82 AT2G23945 412 / 3e-141 Eukaryotic aspartyl protease family protein (.1) Potri.018G106500 [exp] 169 / 2e-48 AT4G30030 150 / 2e-41 Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 162 / 8e-45 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 150 / 1e-40 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 133 / 2e-34 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 121 / 5e-30 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 118 / 9e-29 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 117 / 2e-28 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 117 / 2e-28 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 116 / 3e-28 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10023451 pacid=23160626 polypeptide=Lus10023451 locus=Lus10023451.g ID=Lus10023451.BGIv1.0 annot-version=v1.0 ATGGCACTAATTAGAACACCTCTCATCTTATTCTTATTATTCATCTTTTTCAAATACTCCAACAGCTTGAAACACACCACAAGACTCATCCACCATGACT CCATATTCTCTCCGTTCTACAACGCCTCCGAAACCACCGCCGATCGCGCCTGGAGAGCCACTCGATCCTCCGTCGCACGCCACGCATACCTGTCTTCACA ATCGATGGCGAGGTCAACAGGGATCGAGGTTGGGCTGCAGGTTGAGGACGTGCATCACAACGTCTTCTTCGTGAAATTTTCTATCGGGAATCCTCCGGTG CCTCAGCTGGCCGTTATGGACACCGGCAGCGACTTCCTGTGGGTAAGATGTCTTCCGTGCAGTCCTTGCCGGCCGATAAAGGGTATGCCCTACTTTGATC CGGCCATGTCAACCACTTTCTCCCCACGGCCGTGTAACGCAGACTGCGAAAAGTGCTACGGTCGATTTCCTTGGTCGCCCAAAAAATGTATGTACATAAT AGAATACGAGGACGGATTCCATTCAGAAGGAATATACGCAACGGACCAACTGACTTTCAGGAACTCCGACGACGAAACCACCGCCGTTCCAAACATTGCA TTCGGCTGCGCCACTTCGTTGACCGGAGAGAAAGCGTTTCACGAGCATATCAATGGGATTTTCGGACTATGTATAGGGGATCCTGATGCTATACTCTCCC AGCATTCTTTCTTCAACCAATTCAATTACAAGTTCTCTTACTGTATCGGAGTCCTCTCCGACCATACTTATCCTCACAATCAATTGGCGTTCGGCGACGC CGCTAGATTGACCGGCAGAGCTACTCCTCTTTACATCGAGGGTTCTAGATACAAAGTCCACCTTGTTAACATAAGCTTAGGAACCGAGACGTTGAACATA AGCATCAAAGTGTTCAGAAAAATGTCGTTCAGGAAAGGAGTGGTGGTCGACAGCGGGACGACGCTGTTTTACCTCTACAGCGAAGCTTATGATGTGCTGA AGGCCGCGATCGATAAAACGGGTTCGAGGGTGATGCTGAAGGTTCCGTCGCCTGGGCCACCGTACGAGCTGTGCTACAGAGGCCATGTGTACTCGGACCC TGTCGGGTTTCCGCTGCTGGAACTTCACTTTGTATCGGAGGCAACCTTGGGAATGGAGCCGCCGGAAATCTTCACGCAGATCAACGACGACACATTTTGC ATGGCTATTGTCAGGTCGGATTCAGTTACCGTTATTGGGATAATGGCTCAGCAAAAGTCGAATATTGGGTATGATTTGAAGAAAAAGCTTATGTATTTTG AGAAGATTGAGGGTTGCACTATTATATAG
AA sequence Show only first row Show all	>Lus10023451 pacid=23160626 polypeptide=Lus10023451 locus=Lus10023451.g ID=Lus10023451.BGIv1.0 annot-version=v1.0 MALIRTPLILFLLFIFFKYSNSLKHTTRLIHHDSIFSPFYNASETTADRAWRATRSSVARHAYLSSQSMARSTGIEVGLQVEDVHHNVFFVKFSIGNPPV PQLAVMDTGSDFLWVRCLPCSPCRPIKGMPYFDPAMSTTFSPRPCNADCEKCYGRFPWSPKKCMYIIEYEDGFHSEGIYATDQLTFRNSDDETTAVPNIA FGCATSLTGEKAFHEHINGIFGLCIGDPDAILSQHSFFNQFNYKFSYCIGVLSDHTYPHNQLAFGDAARLTGRATPLYIEGSRYKVHLVNISLGTETLNI SIKVFRKMSFRKGVVVDSGTTLFYLYSEAYDVLKAAIDKTGSRVMLKVPSPGPPYELCYRGHVYSDPVGFPLLELHFVSEATLGMEPPEIFTQINDDTFC MAIVRSDSVTVIGIMAQQKSNIGYDLKKKLMYFEKIEGCTII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	1.7	0.9290
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	6.8	0.9156
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	8.4	0.8854
					Lus10007144 [exp]	8.5	0.8706
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	9.2	0.8659
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10043271 [exp]	9.3	0.7980
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	9.5	0.9051
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	10.4	0.9021
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	10.5	0.8131
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10028798 [exp]	11.2	0.8934

Compare expression of checked genes

Lus10023451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.