Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 445 / 3e-149 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 419 / 2e-139 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G09520 392 / 1e-128 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT3G09530 352 / 4e-113 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT5G59730 350 / 2e-112 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT1G07725 298 / 1e-92 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28640 296 / 5e-92 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT2G28650 273 / 6e-84 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT5G52340 231 / 2e-67 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT3G14090 229 / 9e-67 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040331 [exp] 1030 / 0 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10040329 [exp] 542 / 0 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023455 [exp] 494 / 9e-174 AT3G55150 222 / 3e-68 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 478 / 9e-163 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10005436 [exp] 409 / 5e-135 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 395 / 1e-129 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040872 [exp] 391 / 3e-128 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 389 / 2e-127 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 389 / 3e-127 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212400 [exp] 499 / 2e-170 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 470 / 4e-159 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G234600 [exp] 421 / 6e-140 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 419 / 4e-139 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.009G026900 [exp] 406 / 4e-134 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G166400 [exp] 240 / 8e-71 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 238 / 7e-70 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 236 / 5e-69 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 234 / 4e-68 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.006G203900 [exp] 225 / 4e-65 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10023452 pacid=23160547 polypeptide=Lus10023452 locus=Lus10023452.g ID=Lus10023452.BGIv1.0 annot-version=v1.0 ATGCCAAGTTGCTTCTCAATCCCTTCACCAAAGAGAGCTCTCTCTTCCATCAAACCATTCTCCTCCTCTGCATCATCACCTTCCCCTTCACCTCTCCCTT CCCCTTTCCACTACACCTTCTCACCTTCATCCTCCACCATGGACAAACACATCCAAGCTGCTGAATCCACCATCTCCAAATGGGATCTCAACTCCTCTTC ATTAATCACCCACTTCACTCCCCTTTTCCACCACGGCAAAAAGGACACCAAGGACTTCCTCAAGTCCATCCTTTCCCTTCGCCGTGCCATGCGTCTCCTG AAACAGTCTGACGATTCTGTCTCTTCAGCCAAGCTTGTTCTTTGCCACAAGCTCATGCAGGCTGCCATGAGAAGGCTTGAGAAAGAGTTCCACCTCATTC TGTCCCAAAGCCGAAGTCTTGACCCTTCCATTTCGGATTTGAAGGCGATTACTGATTGCATGACGAGTTCTGGCTACGCCAAGGAGTGCCTCGAGGTCTA CGTCCATGCTCGAAAATCGGTCGTAAATGAAGGACTGAGCCGTGACCTGGGAGTTGAGCAGAGGCTTGAGTTGGAAACTCTCGAGATTCTGATAAAGAAT TGGCTGAACGATGTCCGAGTCTCTGTCAGAACGCTCTTCAAAGTCGAGAAGACACTCTGCGACCTCGTGTTCGCGACATCCGATGAGAGGACAAGAGAGC TGTGTTTCTCCGAGGTGGTCAAGGAAGCAGCAGGGAACCTGTTCAGGTTCCCGGAATTCGTAACTAAGAACAACAAGAAGAATCTGAAGGACCGGATTGT CATTTTCCAACTGATGGACATGTACGAGGCTCTGTTCGACCTGTGGCCCGAGATCGAATCGTTATTTGGAGACGGATCGTGCTCACACGTTAAACAGCAA GCACATTCGTCCATGCTCACCCTTGCAGAGTCAGTTCGCACTAATTTGTCCGATTTCGAGTCCACATTTCAAAAGGAGTACGTAAACTCGTCGAAAGACA CGGTTATTCCTGGTGGTGGCATTCATCCTTTAACCATATCAGTAATGGAATTACTGTCCAAGCTAGCAGATTACGGTGGGATTCTCTCGGACATTATTGC TGATACTTTACCTGAGTTCAATGCTAAGCTGCCTGAATCTCACTACTCGAGTCCAACTTCTGCTCGACTCGCGTGGCTGGTTTTGGTACTCTTATGCAAG CTTGATACGAAATCAGAACAGTATCAGGATGTTTCGCTTTCATACTTGTTCTTAGCGAACAACCTGCAGTTTGTATTCGAGAAGGTCTGCACGACTCGGC TAAGAGTGATCCTGGGAGAGGATTGGGTGTTCAAGCATGCACAGAAGCTGAAAAAGTACGCTGTCAGCTATGAGAAGATCGCGTGGAACAAAGTCTTCTC TGCCTTGCCTAGCAAGCCATTCCCCGCGGAGATGTCGCCTGAAGCTGCAAGAGATCATTTCTTCAGGTTTAACGCGGCTTTCGAGAAGGCGTACAGGAAA CAGGCGAAATTCGTGGTGCCGAATAGGAACTTTAGGGATGCCTTGAAAGTTTCGATAGCGAAGAAACTCGTACCGGTGTATAGAGAGTTTCATGAGATGT ATGGTGGAATGGTGAGTGGGAAGAAGAGTTTGGAGGTGTTGTTGGTGAAGTATGGTCCTGATGATGTGGAGCTGTATCTATCGGATTTGTTCCATGGTGA TTCTGGATCTGATCAGCAGACTCCTTATCTGCAGAATCTAGGACATGGAGAAGGAATAGTTGAAACAAGTGGGAAGAGTGAGTGTACATTAGCACCGTGG AAGAAATTACGCAGCATACTATTTTTTTGA
AA sequence Show only first row Show all	>Lus10023452 pacid=23160547 polypeptide=Lus10023452 locus=Lus10023452.g ID=Lus10023452.BGIv1.0 annot-version=v1.0 MPSCFSIPSPKRALSSIKPFSSSASSPSPSPLPSPFHYTFSPSSSTMDKHIQAAESTISKWDLNSSSLITHFTPLFHHGKKDTKDFLKSILSLRRAMRLL KQSDDSVSSAKLVLCHKLMQAAMRRLEKEFHLILSQSRSLDPSISDLKAITDCMTSSGYAKECLEVYVHARKSVVNEGLSRDLGVEQRLELETLEILIKN WLNDVRVSVRTLFKVEKTLCDLVFATSDERTRELCFSEVVKEAAGNLFRFPEFVTKNNKKNLKDRIVIFQLMDMYEALFDLWPEIESLFGDGSCSHVKQQ AHSSMLTLAESVRTNLSDFESTFQKEYVNSSKDTVIPGGGIHPLTISVMELLSKLADYGGILSDIIADTLPEFNAKLPESHYSSPTSARLAWLVLVLLCK LDTKSEQYQDVSLSYLFLANNLQFVFEKVCTTRLRVILGEDWVFKHAQKLKKYAVSYEKIAWNKVFSALPSKPFPAEMSPEAARDHFFRFNAAFEKAYRK QAKFVVPNRNFRDALKVSIAKKLVPVYREFHEMYGGMVSGKKSLEVLLVKYGPDDVELYLSDLFHGDSGSDQQTPYLQNLGHGEGIVETSGKSECTLAPW KKLRSILFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023452 [exp]	0	1
					Lus10033874 [exp]	2.4	0.8246
AT2G25270			unknown protein		Lus10014341 [exp]	4.4	0.8559
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	4.6	0.8168
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	6.0	0.8111
					Lus10035026 [exp]	10.2	0.8098
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	11.2	0.8098
					Lus10028048 [exp]	12.1	0.8098
AT5G67440		MEL2, NPY3	NAKED PINS IN YUC MUTANTS 3, M...		Lus10025193 [exp]	13.0	0.8098
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10008888 [exp]	13.7	0.8098
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	14.1	0.7401

Compare expression of checked genes

Lus10023452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.