Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 195 / 6e-58 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 186 / 1e-54 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G09520 155 / 3e-43 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G59730 148 / 1e-40 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT2G28640 132 / 7e-35 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 129 / 4e-34 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G09530 124 / 3e-32 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT5G52340 108 / 8e-27 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G50380 108 / 2e-26 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT5G03540 102 / 9e-25 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023452 [exp] 471 / 2e-165 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 408 / 5e-140 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10040329 [exp] 226 / 1e-69 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 192 / 4e-57 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10015221 [exp] 167 / 2e-47 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10004917 [exp] 166 / 2e-47 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10005436 [exp] 166 / 3e-47 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10040872 [exp] 166 / 5e-47 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 146 / 7e-40 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212400 [exp] 218 / 9e-67 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 204 / 1e-61 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 187 / 4e-55 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.009G026900 [exp] 185 / 2e-54 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G234600 [exp] 166 / 2e-47 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.017G093966 [exp] 112 / 8e-28 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1) Potri.012G097100 [exp] 109 / 5e-27 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.016G071000 [exp] 109 / 7e-27 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1) Potri.015G094800 [exp] 108 / 9e-27 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.006G203900 [exp] 103 / 6e-25 AT5G52340 988 / 0.0 exocyst subunit exo70 family protein A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10023455 pacid=23160611 polypeptide=Lus10023455 locus=Lus10023455.g ID=Lus10023455.BGIv1.0 annot-version=v1.0 ATGGAATTCCTGTCCAAGCTAGCAGATTACGGTGGGATTCTCTCGGACATTATTGCAGATAGTTTACCTGAGTTCAATGCTAAGCTGCCTGAATCTGACT ACTCGAGTCCAACTTTGGCTCGACTCGCGTGGCTGGTTTTGGTACTCTTATGCAAGCTTGATACGAAATCAGAACAGTATCAGGATGTTTCGCTTTCATA CATGTTCTTAGCGAACAACCTGCAGTTCGTATTCGAGAAGGTCTGCACGACTCGGCTAAGAGTGATCCTTGGAGAGGATTGGATGTTCAAGCATGCACAG AAACTGAAAAAGTACGCTGTCAACGATGAGAAGATCGCGTGGAGCAAAGTCTTCTCTGCCTTGCCTAGCAAGCCATTCCCCGCAAAGATGTCGCCTGAAG TTGCAAGAGATCATTTCTTCATGTTTAACGTGGCTTTCGAGAAGGCGTATAGGAAACAGGCGAAATTCGTGGTGGCGAATGGGAACTTTAGGGACGCCTT GAAAGTATCGATAGCGAAGAAACTCGTACCGGTGTATAGAGAGTTTCATGAGATTTATGGTGGAATGGTGAGTGGGAAGAAGAGTTTGGAGGTGTTGTTG GTGAAGTATGGTCCTGATGATGTGGAGCAGTATCTATCGGATTTGTTCCATGGTGATTCTGGATCTGATCAGCAGACTCCTTATCTGCAGAAATTAGGAC ATGGAGAAGGAATAGTTGAAACAAGTGGTAAGAGTGAGTGTACATTAGCACCGTGGAAGAAATTACGCAGCATACTATTTTTTGAGCCTTCTTAA
AA sequence Show only first row Show all	>Lus10023455 pacid=23160611 polypeptide=Lus10023455 locus=Lus10023455.g ID=Lus10023455.BGIv1.0 annot-version=v1.0 MEFLSKLADYGGILSDIIADSLPEFNAKLPESDYSSPTLARLAWLVLVLLCKLDTKSEQYQDVSLSYMFLANNLQFVFEKVCTTRLRVILGEDWMFKHAQ KLKKYAVNDEKIAWSKVFSALPSKPFPAKMSPEVARDHFFMFNVAFEKAYRKQAKFVVANGNFRDALKVSIAKKLVPVYREFHEIYGGMVSGKKSLEVLL VKYGPDDVEQYLSDLFHGDSGSDQQTPYLQKLGHGEGIVETSGKSECTLAPWKKLRSILFFEPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	0	1
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	1.0	0.9669
AT3G07870			F-box and associated interacti...		Lus10036105 [exp]	3.2	0.8718
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	3.2	0.9316
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	3.9	0.9175
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	5.7	0.9045
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	5.9	0.8980
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	5.9	0.9032
					Lus10007144 [exp]	10.4	0.8674
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	11.0	0.9024
AT1G61390			S-locus lectin protein kinase ...		Lus10031605 [exp]	11.0	0.8253

Compare expression of checked genes

Lus10023455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.